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001-es BibID:	BIBFORM130889
035-os BibID:	(Scopus)105001410854 (WoS)001513648000001
Első szerző:	Dobránszki Judit (biológus)
Cím:	Gaining insights into epigenetic memories through artificial intelligence and omics science in plants / Dobránszki Judit, Vassileva Valya, Agius Dolores R., Moschou Panagiotis Nikolaou, Gallusci Philippe, Berger Margot M. J., Farkas Dóra, Basso Marcos Fernando, Martinelli Federico
Dátum:	2025
ISSN:	1672-9072
Megjegyzések:	Plants exhibit remarkable abilities to learn, communicate, memorize, and develop stimulusdependent decision?making circuits. Unlike animals, plant memory is uniquely rooted in cellular, molecular, and biochemical networks, lacking specialized organs for these functions. Consequently, plants can effectively learn and respond to diverse challenges, becoming used to recurring signals. Artificial intelligence (AI) and machine learning (ML) represent the new frontiers of biological sciences, offering the potential to predict crop behavior under environmental stresses associated with climate change. Epigenetic mechanisms, serving as the foundational blueprints of plant memory, are crucial in regulating plant adaptation to environmental stimuli. They achieve this adaptation by modulating chromatin structure and accessibility, which contribute to gene expression regulation and allow plants to adapt dynamically to changing environmental conditions. In this review, we describe novel methods and approaches in AI and ML to elucidate how plant memory occurs in response to environmental stimuli and priming mechanisms. Furthermore, we explore innovative strategies exploiting transgenerational memory for plant breeding to develop crops resilient to multiple stresses. In this context, AI and ML can aid in integrating and analyzing epigenetic data of plant stress responses to optimize the training of the parental plants.
Tárgyszavak:	Agrártudományok Növénytermesztési és kertészeti tudományok idegen nyelvű folyóiratközlemény külföldi lapban folyóiratcikk deep learning DNA methylation gene expression machine learning stress memory transgenerational inheritance
Megjelenés:	Journal Of Integrative Plant Biology. - 67 : 9 (2025), p. 2320-2349. -
További szerzők:	Vassileva, Valya Agius, Dolores Rita Moschou, Panagiotis N. Gallusci, Philippe Berger, Margot M. J. Farkas Dóra (1997-) (biomérnök) Basso, Marcos Fernando Martinelli, Federico
Pályázati támogatás:	TKP2021-EGA-20 FIKP
Internet cím:	Szerző által megadott URL DOI Intézményi repozitóriumban (DEA) tárolt változat
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001-es BibID:	BIBFORM125126
035-os BibID:	(Scopus)85209102880
Első szerző:	Dobránszki Judit (biológus)
Cím:	Plant memory and communication of encounters / Judit Dobránszki, Dolores R. Agius, Margot M.J. Berger, Panagiotis N. Moschou, Philippe Gallusci, Federico Martinelli
Dátum:	2025
ISSN:	1360-1385
Megjegyzések:	Plants can finely communicate with each other and other living organisms in a very sophisticated manner. They use biological molecules and even physical cues to establish a molecular dialogue with beneficial organisms as well as their predators and pathogens. Several studies were recently published exploring how plants communicate with each other about their previous encounters or stressful experieces. However, there is almost a complete lack of knowledge on how these intra-, and inter-species communications are directly regulated at the epigenetic level. In this perspective article, we aim to report and provide new hypotheses on the possible epigenetic modifications regulating plant responses at the communication level.
Tárgyszavak:	Agrártudományok Növénytermesztési és kertészeti tudományok idegen nyelvű folyóiratközlemény külföldi lapban folyóiratcikk epigenetics extracellular DNA plant-plant communication RNA interference trans-kingdom communication volatile organic compounds
Megjelenés:	Trends In Plant Science. - 30 : 2 (2025), p. 199-212. -
További szerzők:	Agius, Dolores Rita Berger, Margot M. J. Moschou, Panagiotis N. Gallusci, Philippe Martinelli, Federico
Pályázati támogatás:	TKP2021-EGA-20 FIKP
Internet cím:	DOI Intézményi repozitóriumban (DEA) tárolt változat
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001-es BibID:	BIBFORM104189
035-os BibID:	(WoS)000960793800001 (Scopus)85144543716
Első szerző:	Gallusci, Philippe
Cím:	Deep inside the epigenetic memories of stressed plants / Philippe Gallusci, Dolores R. Agius, Panagiotis Nikolaou Moschou, Judit Dobránszki, Eirini Kaiserli, Federico Martinelli
Dátum:	2023
ISSN:	1360-1385
Megjegyzések:	Recent evidence sheds light on the peculiar type of plant intelligence. Plants have developed complex molecular networks that allow them to remember, optionally choose and make decisions depending on the stress stimulus, although they lack a nervous system. Being sessile, plants can exploit these networks to optimize their resources cost-effectively and maximize their fitness in response to multiple environmental stresses. Even more interesting, is the capability to transmit this experience to the next generation(s) through epigenetic modifications that add to the classical genetic inheritance. In this opinion article, we present concepts and perspectives regarding the capabilities of plants to sense, perceive, remember, re-elaborate, respond and to some extent transmit to their progeny information to adapt more efficiently to climate change.
Tárgyszavak:	Agrártudományok Növénytermesztési és kertészeti tudományok idegen nyelvű folyóiratközlemény külföldi lapban folyóiratcikk adaptation epigenetics transgenerational memory plant intelligence priming
Megjelenés:	Trends In Plant Science. - 28 : 2 (2023), p. 142-153. -
További szerzők:	Agius, Dolores Rita Moschou, Panagiotis N. Dobránszki Judit (1967-) (biológus) Kaiserli, Eirini Martinelli, Federico
Internet cím:	Intézményi repozitóriumban (DEA) tárolt változat DOI Szerző által megadott URL
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001-es BibID:	BIBFORM100332
035-os BibID:	(WoS)000764330700001 (Scopus)85125726899
Első szerző:	Guarino, Francesco
Cím:	An Epigenetic Alphabet of Crop Adaptation to Climate Change / Francesco Guarino, Angela Cicatelli, Stefano Castiglione, Dolores R. Agius, Gul Ebru Orhun, Sotirios Fragkostefanakis, Julie Leclercq, Judit Dobránszki, Eirini Kaiserli, Michal Lieberman-Lazarovich, Merike Sõmera, Cecilia Sarmiento, Cristina Vettori, Donatella Paffetti, Anna M. G. Poma, Panagiotis N. Moschou, Mateo Gašparović, Sanaz Yousefi, Chiara Vergata, Margot M. J. Berger, Philippe Gallusci, Dragana Miladinović, Federico Martinelli
Dátum:	2022
ISSN:	1664-8021
Megjegyzések:	Crop adaptation to climate change is in a part attributed to epigenetic mechanisms which are related to response to abiotic and biotic stresses. Although recent studies increased our knowledge on the nature of these mechanisms, epigenetics remains under-investigated and still poorly understood in many, especially non-model, plants, Epigenetic modifications are traditionally divided into two main groups, DNA methylation and histone modifications that lead to chromatin remodeling and the regulation of genome functioning. In this review, we outline the most recent and interesting findings on crop epigenetic responses to the environmental cues that are most relevant to climate change. In addition, we discuss a speculative point of view, in which we try to decipher the "epigenetic alphabet" that underlies crop adaptation mechanisms to climate change. The understanding of these mechanisms will pave the way to new strategies to design and implement the next generation of cultivars with a broad range of tolerance/resistance to stresses as well as balanced agronomic traits, with a limited loss of (epi)genetic variability.
Tárgyszavak:	Természettudományok Környezettudományok idegen nyelvű folyóiratközlemény külföldi lapban folyóiratcikk abiotic stresses adaptation climate change epigenetics environmental stresses epigenetic code
Megjelenés:	Frontiers in Genetics. - 13 (2022), p. 1-18. -
További szerzők:	Cicatelli, Angela Castiglione, Stefano Agius, Dolores Rita Orhun, Gul Ebru Fragkostefanakis, Sotirios Leclercq, Julie Dobránszki Judit (1967-) (biológus) Kaiserli, Eirini Lieberman-Lazarovich, Michal Sõmera, Merike Sarmiento, Cecilia Vettori, Cristina Paffetti, Donatella Poma, Anna M. G. Moschou, Panagiotis N. Gašparović, Mateo Yousefi, Sanaz Vergata, Chiara Berger, Margot M. J. Gallusci, Philippe Miladinović, Dragana Martinelli, Federico
Pályázati támogatás:	TKP2021-EGA-20 Egyéb
Internet cím:	Szerző által megadott URL DOI Intézményi repozitóriumban (DEA) tárolt változat
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