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001-es BibID:BIBFORM119136
035-os BibID:(Scopus)85183767950 (WOS)001154397400005
Első szerző:Lados Botond B.
Cím:ddRAD-seq generated genomic SNP dataset of Central and Southeast European Turkey oak (Quercus cerris L.) populations / Botond B. Lados, Klára Cseke, Attila Benke, Zoltán A. Köbölkuti, Csilla É. Molnár, László Nagy, Norbert Móricz, Tamás M. Németh, Attila Borovics, Ilona Mészáros, Endre Gy. Tóth
Dátum:2024
ISSN:0925-9864
Megjegyzések:Turkey oak (Quercus cerris L.) is one of the most ecologically and economically significant deciduous tree species in the Central and Southeast European regions. The species has long been known to exhibit high levels of genetic and phenotypic variation. Recent climate response predictions for Turkey oak suggest a significant distribution extension in Europe under climate change. Since Turkey oak has relative drought-tolerant behaviour, it is regarded as a potential alternative for other forest tree species during forestry climate adaptation efforts, not only in its native regions but also in Western Europe. For this reason, the survey of existing genetic variability, genetic resources, and adaptability of this species has great significance. Next-generation sequencing approaches, such as ddRAD-seq (Double digest restriction-site associated DNA sequencing), allow the attainment of high-resolution genome-wide single nucleotide polymorphisms (SNPs). This study provides the first highly variable genome-wide SNP data for Turkey oak generated by ddRAD-seq. The dataset comprises 17 607 de novo and 26 059 reference mapped SNPs for 88 individuals from eight populations, two from Bulgaria, one from Kosovo, and five from Hungary. Reference mapping was carried out by using cork oak's (Quercus suber L.) reference genome. The obtained high-resolution genome-wide markers are suitable for investigating selection and local adaptation and inferring genetic diversity, differentiation, and population structure.
Tárgyszavak:Természettudományok Biológiai tudományok idegen nyelvű folyóiratközlemény külföldi lapban
folyóiratcikk
Balkans
Carpathian Basin
Cork oak
GWAS
Population genetics
Reference mapping
Megjelenés:Genetic Resources And Crop Evolution. - "Accepted by Publisher" : - (2024), p. 11. -
További szerzők:Cseke Klára Benke Attila Köbölkuti Zoltán Attila Molnár Csilla Éva Nagy László Móricz Norbert Németh Tamás Márton Borovics Attila Mészáros Ilona (1952-) (biológus) Tóth Endre György
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