CCL

Összesen 5 találat.
#/oldal:
Részletezés:
Rendezés:

1.

001-es BibID:BIBFORM057822
Első szerző:Dóró Renáta
Cím:Large-scale whole genome sequencing identifies country-wide spread of an emerging G9P[8] rotavirus strain in Hungary, 2012 / Renáta Dóró, Eszter Mihalov-Kovács, Szilvia Marton, Brigitta László, Judit Deák, Ferenc Jakab, Ágnes Juhász, Péter Kisfali, Vito Martella, Béla Melegh, Péter Molnár, Ildikó Sántha, Ferenc Schneider, Krisztián Bányai
Dátum:2014
ISSN:1567-1348
Megjegyzések:With the availability of rotavirus vaccines routine strain surveillance has been launched or continued in many countries worldwide. In this study relevant information is provided from Hungary in order to extend knowledge about circulating rotavirus strains. Direct sequencing of the RT-PCR products obtained by VP7 and VP4 genes specific primer sets was utilized as routine laboratory method. In addition we explored the advantage of random primed RT-PCR and semiconductor sequencing of the whole genome of selected strains. During the study year, 2012, we identified an increase in the prevalence of G9P[8] strains across the country. This genotype combination predominated in seven out of nine study sites (detection rates, 45-83%). In addition to G9P[8]s, epidemiologically major strains included genotypes G1P[8] (34.2%), G2P[4] (13.5%), and G4P[8] (7.4%), whereas unusual and rare strains were G3P[8] (1%), G2P[8] (0.5%), G1P[4] (0.2%), G3P[4] (0.2%), and G3P[9] (0.2%). Whole genome analysis of 125 Hungarian human rotaviruses identified nine major genotype constellations and uncovered both intra- and intergenogroup reassortment events in circulating strains. Intergenogroup reassortment resulted in several unusual genotype constellations, including mono-reassortant G1P[8] and G9P[8] strains whose genotype 1 (Wa-like) backbone gene constellations contained DS1-like NSP2 and VP3 genes, respectively, as well as, a putative bovine-feline G3P[9] reassortant strain. The conserved genomic constellations of epidemiologically major genotypes suggested the clonal spread of the re-emerging G9P[8] genotype and several co-circulating strains (e.g., G1P[8] and G2P[4]) in many study sites during 2012. Of interest, medically important G2P[4] strains carried bovine-like VP1 and VP6 genes in their genotype constellation. No evidence for vaccine associated selection, or, interaction between wild-type and vaccine strains was obtained. In conclusion, this study reports the reemergence of G9P[8] strains across the country and indicates the robustness of whole genome sequencing in routine rotavirus strain surveillance.
Tárgyszavak:Orvostudományok Elméleti orvostudományok idegen nyelvű folyóiratközlemény külföldi lapban
Genotype
Rotavirus
Surveillance
Whole genome sequencing
Megjelenés:Infection, Genetics and Evolution. - 28 (2014), p. 495-512. -
További szerzők:Mihalov-Kovács Eszter Marton Szilvia László Brigitta (1983-) (molekuláris biológus, mikrobiológus) Deák Judit (mikrobiológus) Jakab Ferenc Juhász Ágnes Kisfali Péter Martella, Vito Melegh Béla Molnár Péter (Budapest orvos) Sántha Ildikó (Miskolc) Schneider Ferenc Bányai Krisztián
Internet cím:Szerző által megadott URL
DOI
Intézményi repozitóriumban (DEA) tárolt változat
Borító:

2.

001-es BibID:BIBFORM057820
Első szerző:Dóró Renáta
Cím:Review of global rotavirus strain prevalence data from six years post vaccine licensure surveillance : is there evidence of strain selection from vaccine pressure? / Renáta Dóró, Brigitta László, Vito Martella, Eyal Leshem, Jon Gentsch, Umesh Parashar, Krisztián Bányai
Dátum:2014
Megjegyzések:Comprehensive reviews of pre licensure rotavirus strain prevalence data indicatedthe global importance of six rotavirus genotypes, G1P[8], G2P[4], G3P[8], G4P[8],G9P[8] and G12P[8]. Since 2006, two vaccines, the monovalent Rotarix (RV1) andthe pentavalent RotaTeq (RV5) have been available in over 100 countriesworldwide. Of these, 60 countries have already introduced either RV1 or RV5 intheir national immunization programs. Post licensure vaccine effectiveness isclosely monitored worldwide. This review aimed at describing the global changesin rotavirus strain prevalence over time. The genotype distribution of the nearly47,000 strains that were characterized during 2007-2012 showed similar picture tothat seen in the preceding period. An intriguing finding was the transientpredominance of heterotypic strains, mainly in countries using RV1. Unusual andnovel antigen combinations continue to emerge, including some causing localoutbreaks, even in vaccinated populations. In addition, vaccine strains have beenfound in both vaccinated infants and their contacts and there is evidence forgenetic interaction between vaccine and wild-type strains. In conclusion, thepost-vaccine introduction strain prevalence data do not show any consistentpattern indicative of selection pressure resulting from vaccine use, although theincreased detection rate of heterotypic G2P[4] strains in some countriesfollowing RV1 vaccination is unusual and this issue requires further monitoring.
Tárgyszavak:Orvostudományok Elméleti orvostudományok idegen nyelvű folyóiratközlemény külföldi lapban
Genotype
RotaTeq
Rotarix
Rotavirus
Surveillance
Megjelenés:Infection Genetics and Evolution. - 28 (2014), p. 446-461. -
További szerzők:László Brigitta (1983-) (molekuláris biológus, mikrobiológus) Martella, Vito Leshem, Eyal Gentsch, Jon R. Parashar, Umesh D. Bányai Krisztián
Internet cím:DOI
Intézményi repozitóriumban (DEA) tárolt változat
Borító:

3.

001-es BibID:BIBFORM065244
Első szerző:Ferenczi Annamária (molekuláris biológus, mikrobiológus)
Cím:Phylogenetic and functional analysis of sequence variation of human papillomavirus type 31 E6 and E7 oncoproteins / Annamária Ferenczi, Eszter Gyöngyösi, Anita Szalmás, Brigitta László, József Kónya, György Veress
Dátum:2016
ISSN:1567-1348
Megjegyzések:High-risk human papillomaviruses (HPV) are the causative agents of cervical and other anogenital cancers as well as a subset of head and neck cancers. The E6 and E7 oncoproteins of HPV contribute to oncogenesis by associating with the tumour suppressor protein p53 and pRb, respectively. For HPV types 16 and 18, intratypic sequence variation was shown to have biological and clinical significance. The functional significance of sequence variation among HPV 31 variants was studied less intensively. HPV 31 variants belonging to different variant lineages were found to have differences in persistence and in the ability to cause high grade cervical intraepithelial neoplasia. In the present study, we started to explore the functional effects of natural sequence variation of HPV 31 E6 and E7 oncoproteins. The E6 variants were tested for their effects on p53 protein stability and transcriptional activity, while the E7 variants were tested for their effects on pRb protein level and also on the transcriptional activity of E2F transcription factors. HPV 31 E7 variants displayed uniform effects on pRb stability and also on the activity of E2F transcription factors. HPV 31 E6 variants had remarkable differences in the ability to inhibit the trans-activation function of p53 but not in the ability to induce the in vivo degradation of p53. Our results indicate that natural sequence variation of the HPV 31 E6 protein may be involved in the observed differences in the oncogenic potential between HPV 31 variants.
Tárgyszavak:Orvostudományok Elméleti orvostudományok idegen nyelvű folyóiratközlemény külföldi lapban
human papillomavirus
type 31
E6
E7
variants
functional analysis
Megjelenés:Infection, Genetics and Evolution 43 (2016), p. 94-100. -
További szerzők:Gyöngyösi Eszter (1983-) (molekuláris biológus, mikrobiológus) Szalmás Anita (1978-) (biológus, mikrobiológus, klinikai mikrobiológus) László Brigitta (1983-) (molekuláris biológus, mikrobiológus) Kónya József (1964-) (szakorvos, klinikai mikrobiológus) Veress György (1966-) (biológus, mikrobiológus)
Internet cím:Szerző által megadott URL
DOI
Intézményi repozitóriumban (DEA) tárolt változat
Borító:

4.

001-es BibID:BIBFORM096437
Első szerző:Nagy Zsófia (molekuláris biológus)
Cím:Effect of E2 and long control region polymorphisms on disease severity in human papillomavirus type 11 mediated mucosal disease : protein modelling and functional analysis / Zsófia Nagy, Zoltán Pethő, Gábor Kardos, Tamás Major, Attila Szűcs, Krisztina Szarka
Dátum:2021
ISSN:1567-1348
Megjegyzések:Interaction of the long control region (LCR) and the E2 protein of HPV11s was studied by in silico modelling and in vitro functional analysis. Genomes of HPV11s from fifteen (six known and nine novel) patients (two solitary papillomas, eleven respiratory papillomatoses of different severity, one condyloma acuminatum and one cervical atypia) were sequenced; E2 polymorphisms were analysed in silico by protein modelling. E2 and LCR variants were cloned into pcDNA3.1+ expression vector and into pALuc reporter vector, respectively, transfected to HEp2 cells alone or in different combinations and the luciferase activity was measured. In the E2, the ubiquitous polymorphism K308R caused stronger binding between the dimers but did not alter DNA binding; E2s with this polymorphism were significantly less efficient than the reference in promoting LCR activity. The unique polymorphism Q86K changed the negative surface charge of E2 (Q86) to positive (K86). The unique polymorphisms S245F and N247T in the hinge region disrupt a probable phosphorylation site in a RXXS motif targeted by protein kinase A and B, but do not affect directly the amino acids critical to nuclear transport. Both unique patterns partly restored the LCR activating potential disrupted by K308R. A unique E2/E4 ORF with a 58-bp deletion leading to a frameshift and an early stop codon resulted in a practically nonfunctional E2, and was associated with a papillomatosis with dysplasia. When testing existing LCR-E2 combinations, LCR with intrinsically lower enhancer capacity was only marginally activated by its E2 (R308 and the deletion mutant), and did not significantly exceed the activity of the reference LCR without E2. Combined with more potent LCRs associated with more severe disease, the activity was significantly higher, but still significantly lower than LCRs with reference E2. In summary, LCR-E2 interaction determined by their polymorphisms may explain, at least partly, differences in disease severity.
Tárgyszavak:Orvostudományok Elméleti orvostudományok idegen nyelvű folyóiratközlemény külföldi lapban
folyóiratcikk
Low-risk human papillomavirus
Recurrent respiratory papillomatosis
Genome polymorphisms
Long control region
Transactivating potential
Megjelenés:Infection Genetics and Evolution. - 93 (2021), p. 1-13. -
További szerzők:Pethő Zoltán (1989-) (orvos) Kardos Gábor (1974-) (szakorvos, klinikai mikrobiológus) Major Tamás (1973-) (fül-orr-gégész) Szűcs Attila (1970-) (fül-orr-gégész) Szarka Krisztina (1971-) (molekuláris biológus, mikrobiológus)
Internet cím:Szerző által megadott URL
DOI
Intézményi repozitóriumban (DEA) tárolt változat
Borító:

5.

001-es BibID:BIBFORM082111
Első szerző:Szinai Mihály
Cím:Comparative analysis of human papillomavirus type 6 complete genomes originated from head and neck and anogenital disorders / Szinai Mihály, Nagy Zsófia, Máté Petra, Kovács Dávid, Laczkó Levente, Kardos Gábor, Sápy Tamás, Szűcs Attila, Szarka Krisztina
Dátum:2019
ISSN:1567-1348
Megjegyzések:It is increasingly recognized that fundamental differences exist between high-risk and low-risk human papillomavirus (HPV) genotypes regarding interactions with the host. This study aims to join the recently emerging efforts to uncover these differences at the complete genome level and to study how they may influence the disease caused. Sixteen samples of thirteen patients with various HPV6-mediated benign mucosal disorders (nine recurrent respiratory papillomatoses with 2-8 recurrences, one condyloma acuminatum and three premalignant lesions of the genital mucosa) were sampled to determine the complete virus genomes. We collected the 197 HPV6 complete genomes deposited in the GenBank for cluster analysis to determine (sub)lineages. Genome polymorphisms were determined against the reference sequences of the (sub)lineages. Genome polymorphisms of the long control region (LCR) were tested for putative transcription factor binding sites; their functional analysis was performed by transient transfection of cloned whole LCRs into HEp-2 cells using a luciferase reporter system. Genomes from the same patients were always identical. Three, nine and one patients carried HPV6 lineage A, sublineage B1 and B2 variants, respectively. The three lineage A sequences were highly similar to each other, but distinct from the reference genome. A unique non-synonymous single nucleotide polymorphism (SNP) was found in the E5a open reading frame (ORF). Sublineage B1 genomes were more diverse, exhibited unique non-synonymous SNPs in the LCR and the E2/E4, L1, L2 ORFs. LCR activity of lineage A and sublineage B1 differed significantly; activity of one sublineage B1 LCR exhibiting two unique SNPs was significantly higher than that of other B1 LCR variants, close to the mean of LCR activities of lineage A variants. Different HPV6 lineages showed marked differences in variability patterns of the different genome regions. This may be involved in the differences in their distribution in different diseases or patient populations.
Tárgyszavak:Orvostudományok Egészségtudományok idegen nyelvű folyóiratközlemény külföldi lapban
folyóiratcikk
Cervical atypia
Condyloma acuminatum
Genome polymorphisms
Intratypic variation
Low-risk human papillomavirus
Recurrent respiratory papillomatosis
Megjelenés:INFECTION GENETICS AND EVOLUTION. - 71 (2019), p. 140-150. -
További szerzők:Nagy Zsófia (1991-) (molekuláris biológus) Máté Petra Kovács Dávid (1989-) (fül-orr-gégész) Laczkó Levente (1992-) (biológus) Kardos Gábor (1974-) (szakorvos, klinikai mikrobiológus) Sápy Tamás (1970-) (szülész-nőgyógyász) Szűcs Attila (1970-) (fül-orr-gégész) Szarka Krisztina (1971-) (molekuláris biológus, mikrobiológus)
Internet cím:Szerző által megadott URL
DOI
Intézményi repozitóriumban (DEA) tárolt változat
Borító:
Rekordok letöltése1