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001-es BibID:BIBFORM076618
035-os BibID:(cikkazonosító)e0204653 (WOS)000446383500033 (Scopus)85054465081
Első szerző:Ashrafzadeh, Mohammad Reza
Cím:Large-scale mitochondrial DNA analysis reveals new light on the phylogeography of Central and Eastern-European Brown hare (Lepus europaeus Pallas, 1778) / Mohammad Reza Ashrafzadeh, Mihajla Djan, László Szendrei, Algimantas Paulauskas, Massimo Scandura, Zoltán Bagi, Daniela Elena Ilie, Nikoloz Kerdikoshvili, Panek Marek, Noémi Soós, Szilvia Kusza
Dátum:2018
ISSN:1932-6203
Megjegyzések:European brown hare, Lepus europaeus, from Central and Eastern European countries (Hungary, Poland, Serbia, Lithuania, Romania, Georgia and Italy) were sampled, and phylogenetic analyses were carried out on two datasets: 1.) 137 sequences (358 bp) of control region mtDNA; and 2.) 105 sequences of a concatenated fragment (916 bp), including the cytochrome b, tRNA-Thr, tRNA-Pro and control region mitochondrial DNA. Our sequences were aligned with additional brown hare sequences from GenBank. A total of 52 and 51 haplotypes were detected within the two datasets, respectively, and assigned to two previously described major lineages: Anatolian/Middle Eastern (AME) and European (EUR). Furthermore, the European lineage was divided into two subclades including South Eastern European (SEE) and Central European (CE). Sympatric distribution of the lineages of the brown hare in South-Eastern and Eastern Europe revealed contact zones there. BAPS analysis assigned sequences from L. europaeus to five genetic clusters, whereas CE individuals were assigned to only one cluster, and AME and SEE sequences were each assigned to two clusters. Our findings uncover numerous novel haplotypes of Anatolian/Middle Eastern brown hare outside their main range, as evidence for the combined influence of Late Pleistocene climatic fluctuations and anthropogenic activities in shaping the phylogeographic structure of the species. Our results support the hypothesis of a postglacial brown hare expansion from Anatolia and the Balkan Peninsula to Central and Eastern Europe, and suggest some slight introgression of individual haplotypes from L. timidus to L. europaeus.
Tárgyszavak:Agrártudományok Állattenyésztési tudományok idegen nyelvű folyóiratközlemény külföldi lapban
folyóiratcikk
Megjelenés:Plos One. - 13 : 10 (2018), p. 1-20. -
További szerzők:Djan, Mihajla (biológus) Szendrei László (1964-) (agrármérnök) Paulauskas, Algimantas Scandura, Massimo Bagi Zoltán (1987-) (természetvédelmi mérnök, állatgenetika) Ilie, Daniela Elena Kerdikoshvili, Nikoloz Marek, Panek Soós Noémi (1981-) (biológus) Kusza Szilvia (1979-) (agrármérnök)
Pályázati támogatás:EFOP-3.6.3-VEKOP-16-2017-00008
EFOP
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Intézményi repozitóriumban (DEA) tárolt változat
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2.

001-es BibID:BIBFORM111442
035-os BibID:(cikkazonosító)197 (Scopus)85158924988 (WoS)000983708900001
Első szerző:Astuti, Putri Kusuma (állattenyésztési genetikus)
Cím:Genetic polymorphism in European and African sheep breeds reared in Hungary based on 48 SNPs associated with resistance to gastrointestinal parasite infection using KASP-PCR technique / Putri Kusuma Astuti; Dinu Gavojdian; Daniela Elena Ilie; George Wanjala; István Monori; Zoltán Bagi; Szilvia Kusza
Dátum:2023
ISSN:0049-4747 1573-7438
Megjegyzések:This pilot study used an alternative and economically efcient technique, the Kompetitive Allele-Specifc Polymerase Chain Reaction (KASP-PCR) to examine 48 SNPs from 11 parasite-resistance genes found on 8 chromosomes in 110 animals from fve sheep breeds reared in Hungary; Hungarian Tsigai, White Dorper, Dorper, Ile de France, and Hungarian Merino. Allele and genotype frequencies, fxation index, observed heterozygosity, expected heterozygosity, F statistic, and their relationship with the Hardy-Weinberg equilibrium (WHE) and the polymorphic information content (PIC) were determined, followed by principal component analysis (PCA). As much as 32 SNPs out of the 48 initially studied were successfully genotyped. A total of 9 SNPs, 4 SNPs in TLR5, 1 SNP in TLR8, and 4 SNPs in TLR2 genes, were polymorphic. The variable genotype and allele frequency of the TLRs gene indicated genetic variability among the studied sheep breeds, with the Hungarian Merino exhibiting the most polymorphisms, while Dorper was the population with the most SNPs departing from the HWE. According to the PIC value, the rs430457884-TLR2, rs55631273-TLR2, and rs416833129-TLR5 were found to be informative in detecting polymorphisms among individuals within the populations, whereas the rs429546187-TLR5 and rs424975389- TLR5 were found to have a signifcant infuence in clustering the population studied. This study reported a moderate level of genetic variability and that a low to moderate within-breed diversity was maintained in the studied populations.
Tárgyszavak:Agrártudományok Állattenyésztési tudományok idegen nyelvű folyóiratközlemény külföldi lapban
folyóiratcikk
KASP PCR
Ovis aries
Parasite resistance genes
Polymorphism
TLRs
Megjelenés:Tropical Animal Health and Production. - 55 : 3 (2023), p. 1-12. -
További szerzők:Gavojdian, Dinu Ilie, Daniela Elena Wanjala, George (1984-) (Animal scientist) Monori István (1976-) (agrármérnök) Bagi Zoltán (1987-) (természetvédelmi mérnök, állatgenetika) Kusza Szilvia (1979-) (agrármérnök)
Pályázati támogatás:EFOP-3.6.2-16-2017-00001
EFOP
VP3-16.1.1-4.1.5- 4.2.1-4.2.2-8.1.1-8.2.1-8.3.1-8.5.1-8.5.2-8.6.1-17
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Internet cím:Intézményi repozitóriumban (DEA) tárolt változat
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3.

001-es BibID:BIBFORM106134
035-os BibID:(cikkazonosító)22348 (WOS)000904416000001 (Scopus)85144635665
Első szerző:Astuti, Putri Kusuma (állattenyésztési genetikus)
Cím:Validation of SNP markers for thermotolerance adaptation in Ovis aries adapted to different climatic regions using KASP-PCR technique / Putri Kusuma Astuti, Daniela Elena Ilie, Dinu Gavojdian, George Wanjala, Bouabid Badaoui, Husein Ohran, Eva Pasic-Juhas, Zoltán Bagi, András Jávor, Szilvia Kusza
Dátum:2022
ISSN:2045-2322
Megjegyzések:A study on 51 SNPs belonging to 29 genes related to heat stress was carried out in 720 sheep from 17 different breeds adapted to different climates from Hungary, Bosnia and Herzegovina, Morocco and Romania, using Kompetitive Allele?Specific Polymerase Chain Reaction. Genotype frequency and the Hardy?Weinberg equilibrium were calculated, followed by a clustering using the Principal Component Analysis. We analyzed the polymorphisms in the following genes analyzed: HSPA12A, HSP90AA1, IL33, DIO2, BTNL2, CSN2, ABCG1, CSN1S1, GHR, HSPA8, STAT3, and HCRT. We emphasized on HSPA12A and HSPA8 genes as they were successfully genotyped in all studied flocks in which genotype frequency patterns were identified. Contrary to previous findings, the A allele for HSPA8 SNP was not observed in the heat tolerant breeds, being found exclusively in cold-tolerant breeds. The principal component analysis could not clearly differentiate the breeds, while plot concentration was slightly varied among the three groups, with HSP90AA1 and IL33 SNPs' loading values significantly contributing to PC1 and PC2. We confirmed previous works that the HSPA12A, HSPA8, HSP90AA1 and IL33 SNPs are potential candidate markers for thermotolerance adaptation in sheep. This research contributes to the genetic variability of SNPs for thermotolerance adaptability in sheep.
Tárgyszavak:Agrártudományok Állattenyésztési tudományok idegen nyelvű folyóiratközlemény külföldi lapban
folyóiratcikk
Megjelenés:Scientific Reports. - 12 (2022), p. 1-9. -
További szerzők:Ilie, Daniela Elena Gavojdian, Dinu Wanjala, George (1984-) (Animal scientist) Badaoui, Bouabid (1979-) (animal genetics engineer) Ohran, Husein Pasic-Juhas, Eva Bagi Zoltán (1987-) (természetvédelmi mérnök, állatgenetika) Jávor András (1952-) (agrármérnök) Kusza Szilvia (1979-) (agrármérnök)
Pályázati támogatás:EFOP-3.6.2-16-2017-00001
EFOP
2021-1.2.4-TÉT-2021-00014
Egyéb
Internet cím:Szerző által megadott URL
DOI
Intézményi repozitóriumban (DEA) tárolt változat
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