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1.

001-es BibID:BIBFORM101096
Első szerző:Dobránszki Judit (biológus)
Cím:Transcription Profile of Potato (Solanum tuberosum L.) Growing In Vitro / Judit Dobránszki, Norbert Hidvégi, Andrea Gulyás, Bianka Tóth, Jaime A. Teixeira da Silva
Dátum:2021
ISSN:0721-7595
Tárgyszavak:Agrártudományok Növénytermesztési és kertészeti tudományok idegen nyelvű folyóiratközlemény külföldi lapban
folyóiratcikk
Megjelenés:Journal Of Plant Growth Regulation. - 40 : 2 (2021), p. 749-760. -
További szerzők:Hidvégi Norbert (1986-) Gulyás Andrea (1985-) Tóth Bianka (1988-) (biológus) Teixeira da Silva, Jaime A.
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2.

001-es BibID:BIBFORM088931
Első szerző:Dobránszki Judit (biológus)
Cím:Editorial Responsibilities: Both sides of the coin / Judit Dobránszki, Jaime A. Teixeira da Silva
Dátum:2016
Tárgyszavak:Természettudományok Biológiai tudományok beszámoló
folyóiratcikk
Megjelenés:Journal of Educational and Social Research. - 6 (2016), p. 9-10. -
További szerzők:Teixeira da Silva, Jaime A.
Internet cím:Intézményi repozitóriumban (DEA) tárolt változat
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3.

001-es BibID:bibEBI00026258
Első szerző:Dobránszki Judit (biológus)
Cím:Abiotic stress elements in in vitro potato (Solanum tuberosum L.) exposed to air-based and liquid-based ultrasound: A comparative transcriptomic assessment / Judit Dobránszki, Norbert Hidvégi, Andrea Gulyás, Bianka Tóth, Jaime A. Teixeira da Silva
Dátum:2020
ISSN:0079-6107
Megjegyzések:Ultrasound (US) can modify the plant growth and development. Previous assessments of the transcriptome of in vitro potato (Solanum tuberosum L.) exposed to US transmitted through air (AB-US) or liquid (PE-US) revealed the up- or down-regulation of several stress-related differentially expressed genes (DEGs) related to abiotic stress. In a bid to better characterize stress-related elements over a four-week period, the transcriptome of AB-US was compared to that of PE-US. When comparing the controls of both treatments, DEGs related to hypoxia were not detected. Nevertheless, hypoxia-related DEGs were detected in the combination of liquid medium and ultrasonication. DEGs coding for chitinase, peroxidase, glutathione-S-transferase, transcription factors of ERF (ethylene responsive factor), DREB (dehydration-responsive element-binding), WRKY and MYB were also significantly highly expressed in PE-US, relative to AB-US. Up- and down-regulation of DEGs related to metabolic processes, and enzymes of the antioxidant system also confirm that PE-US is a more acute abiotic stress than AB-US.
Tárgyszavak:Agrártudományok Növénytermesztési és kertészeti tudományok idegen nyelvű folyóiratközlemény külföldi lapban
folyóiratcikk
Abiotic stress
Differentially expressed genes
Heat shock proteins
Plant growth
Megjelenés:Progress In Biophysics & Molecular Biology. - 158 (2020), p. 47-56. -
További szerzők:Hidvégi Norbert (1986-) Gulyás Andrea (1985-) Tóth Bianka (1988-) (biológus) Teixeira da Silva, Jaime A.
Pályázati támogatás:NKFIH-1150-6/2019
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4.

001-es BibID:BIBFORM087361
035-os BibID:(WoS)000485943600017 (Scopus)85070221663
Első szerző:Dobránszki Judit (biológus)
Cím:Corrective factors for author- and journal-based metrics impacted by citations to accommodate for retractions / Dobránszki Judit, Jaime A. Teixeira da Silva
Dátum:2019
ISSN:0138-9130
Megjegyzések:Citation-based metrics are frequently used to evaluate the level, or quality, of a researcher, or their work, often as a function of the ranking of the journal in which they publish, and broadly tend to be divided into journal-based metrics (JBMs) and author-based metrics (ABMs). Despite wide knowledge of the gaming of such metrics, in particular the Clarivate Analytics journal impact factor (JIF), no suitable substitute concept has yet emerged, nor has any corrective measure been developed. In a post-publication peer review world of increasing retractions, and within a framework of open science, we propose correction factors for JBMs and ABMs that take into account retractions. We describe ways to correct the JIF, CiteScore, the 5-year Impact Factor, Immediacy Index, Cited Half-Life, Raw Impact per Paper and other JBMs (Eigenfactor Score and Article Influence Score) as well as the h-index, one of the most widespread ABMs, depending on the number of retractions for that journal or individual, respectively. The existence of such corrective factors could make the use of these metrics more transparent, and might allow them to be used in a world that is adapting to an increase in retractions and corrective measures to deal with erroneous scientific literature. We caution that such correction factors should be used exclusively as such, and should not be viewed, or used, as punitive factors.
Tárgyszavak:Agrártudományok Növénytermesztési és kertészeti tudományok idegen nyelvű folyóiratközlemény külföldi lapban
folyóiratcikk
Megjelenés:Scientometrics. - 121 : 1 (2019), p. 387-398. -
További szerzők:Teixeira da Silva, Jaime A.
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5.

001-es BibID:BIBFORM079350
Első szerző:Dobránszki Judit (biológus)
Cím:Ultrasonication of in vitro potato single node explants: Activation and recovery of antioxidant defence system and growth responses / Judit Dobránszki, Georgina Asbóth, Dávid Homoki, Piroska Bíró-Molnár, Jaime A. Teixeira da Silva, Judit Remenyik
Dátum:2017
ISSN:0981-9428
Megjegyzések:The ability to use sound or ultrasound (US) to modify plant growth in vitro, and if possible, to improve yield or productivity, would benefit horticultural scientists. In this study, potato (Solanum tuberosum L. cv. Desirée) in vitro node segments with a single leaf were exposed to US (35 kHz, 70 W, for 20 min). Morphological, physiological and biochemical parameters were measured. Treatment with US 24 h after ultrasonication temporarily accelerated shoot growth but inhibited the development and growth of roots due to a decrease in the level of AA directly after ultrasonication. At the end of the subculture period, i.e., 4 weeks after US treatment, shoot length increased 20% more than control shoots after 4 weeks, while shoot fresh weight was 24% higher than that of control shoots, representing the long-term after-effect of the US treatment. The antioxidant defence system was induced, partly by intensive plantlet growth and development from node segments, and partly by abiotic stress caused by the US treatment. Immediately (0 h) or 24 h after ultrasonication, superoxide dismutase, ascorbate peroxidase, and glutathione reductase activity increased significantly, as did the concentration of low molecular weight antioxidants (GSSG, GSH, AA, TCPa). However, there was no glutathione peroxidase activity, most likely due to the lack of selenium in the basal in vitro growth medium. Therefore, the glutathione-S-transferase path of the ascorbate-glutathione pathway was induced both by metabolic processes and by abiotic stresses and took part in the reduction of organic peroxides using glutathione. US treatment ameliorated the ratios of ascorbic acid/glutathione and reduced/oxidized glutathione, ensuring the development of plantlets with significantly improved shoot parameters, such as higher shoot length and fresh weight, by the end of the subculture period.
Tárgyszavak:Agrártudományok Élelmiszertudományok idegen nyelvű folyóiratközlemény külföldi lapban
Ascorbate peroxidase
Ascorbic acid
Glutathione-S-transferase
Shoot growth
Superoxide dismutase
Ultrasonication
Megjelenés:Plant Physiology And Biochemistry. - 121 (2017), p. 153-160. -
További szerzők:Pesti-Asbóth Georgina (1990-) (élelmiszerbiztonsági és -minőségi mérnök) Homoki Dávid (1988-) (növényorvos) Bíróné Molnár Piroska (1970-) (biokémia) Teixeira da Silva, Jaime A. Gálné Remenyik Judit (1965-) (kémia tanár, okleveles vegyész)
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6.

001-es BibID:BIBFORM078531
035-os BibID:(WoS)000472509400011 (Scopus)85065183537
Első szerző:Dobránszki Judit (biológus)
Cím:mRNA transcription profile of potato (Solanum tuberosum L.) exposed to ultrasound during different stages of in vitro plantlet development / Judit Dobránszki, Norbert Hidvégi, Andrea Gulyás, Jaime A. Teixeira da Silva
Dátum:2019
ISSN:0167-4412 1573-5028
Megjegyzések:Ultrasound (US) can influence plant growth and development. To better understand the genetic mechanism underlying the physiological response of potato to US, single-node segments of four-week-old in vitro plantlets were subjected to US at 35 kHz for 20 min. Following mRNA purification, 10 cDNA libraries were assessed by RNA-seq. Significantly differentially expressed genes (DEGs) were categorized by gene ontology or Kyoto Encyclopedia of Genes and Genomes identifiers. The expression intensity of 40,430 genes was studied. Several hundred DEGs associated with biosynthesis, carbohydrate metabolism and catabolism, cellular protein modification, and response to stress, and which were expressed mainly in the extracellular region, nucleus, and plasma membrane, were either up- or down-regulated in response to US. RT-qPCR was used to validate RNA-seq data of 10 highly up- or down-regulated DEGs, and both Spearman and Pearson correlations between SeqMonk LFC and RT-qPCR LFC were highly positive (0.97). This study examines how some processes evolved over time (0 h, 24 h, 48 h, 1 week and 4 weeks) after an abiotic stress (US) was imposed on in vitro potato explants, and provides clues to the temporal dynamics in DEG-based enzyme functions in response to this stress. Despite this abiotic stress, plantlets survived.
Tárgyszavak:Természettudományok Biológiai tudományok idegen nyelvű folyóiratközlemény külföldi lapban
folyóiratcikk
Abiotic stress
Antioxidant
DEG
Enzyme
Plant growth
Ultrasonication
Wounding
Megjelenés:Plant Molecular Biology. - 100 : 4-5 (2019), p. 511-525. -
További szerzők:Hidvégi Norbert (1986-) Gulyás Andrea (1985-) Teixeira da Silva, Jaime A.
Pályázati támogatás:20428-3/2018/FEKUTSTRAT
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7.

001-es BibID:BIBFORM016710
Első szerző:Dobránszki Judit (biológus)
Cím:Adventitious shoot regeneration from leaf thin cell layers in apple / Dobránszki J., Teixeira da Silva J.A.
Dátum:2011
ISSN:0304-4238
Tárgyszavak:Agrártudományok Növénytermesztési és kertészeti tudományok idegen nyelvű folyóiratközlemény külföldi lapban
apple, TCL
regeneration
Megjelenés:Scientia Horticulturae. - 127 : 3 (2011), p. 460-463. -
További szerzők:Teixeira da Silva, Jaime A.
Internet cím:DOI
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8.

001-es BibID:BIBFORM008902
Első szerző:Dobránszki Judit (biológus)
Cím:Micropropagation of apple - a review / Judit Dobránszki, Jaime A. Teixeira da Silva
Dátum:2010
ISSN:0734-9750
Tárgyszavak:Agrártudományok Növénytermesztési és kertészeti tudományok idegen nyelvű folyóiratközlemény külföldi lapban
in vitro
Malus sp.
shoot multiplication
rooting
production of propagation materials
Megjelenés:Biotechnology Advances. - 28 : 4 (2010), p. 462-488. -
További szerzők:Teixeira da Silva, Jaime A.
Internet cím:DOI
elektronikus változat
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9.

001-es BibID:BIBFORM079121
Első szerző:Gulyás Andrea
Cím:Changes in DNA methylation pattern of apple long-term in vitro shoot culture and acclimatized plants / Andrea Gulyás, Judit Dobránszki, Erzsébet Kiss, Jaime A. Teixeira da Silva, Katalin Posta, Norbert Hidvég
Dátum:2019
ISSN:0176-1617
Megjegyzések:DNA methylation is a process of epigenetic modification that can alter the functionality of a genome. Using whole-genome bisulfite sequencing, this study quantify the level of DNA methylation in the epigenomes of two diploid apple (Malus x domestica) scion cultivars ('McIntosh' and 'Húsvéti rozmaring') derived from three environmental conditions: in vivo mother plants in an orchard, in vitro culture, and acclimatized in vitro plants. The global DNA methylation levels were not dependent on the source of plant material, and the average level of DNA methylation was 49.77%, 34.65% and 8.77% in CpG, CHG and CHH contexts, respectively. Significant differences in DNA methylation were identified in 586 (specifically 334, 201 and 131 in CpG, CHG and CHH contexts, respectively) out of 45,116 genes, including promoter and coding sequences. These were classified as differentially methylated genes (DMGs). This is a 1.3% difference in the level of DNA methylation of genes in response to a change in the environment. Differential methylation was visualised by MA plots and functional genomic maps were established for biological processes, molecular functions and cellular components. When the DMGs were considered, in vitro tissue culture resulted in the highest level of methylation, but it was lower in acclimatized in vitro plants which was similar to that in the mother tree. Methylation patterns of the two scions differed, indicating cultivar-specific epigenetic regulation of gene expression during adaptation to various environments. After selecting genes that displayed differences larger than ?10% in CpG and CHG contexts, or larger than ?1.35% in the CHH context from among the DMGs, they were annotated in Blast2?GO v5.1.12 for Gene Ontology. DMGs identified as MD07G1113000 (protein transport), MD08G1041600 (extracellular space), MD09G1054800 (phosphatidic acid binding), and MD10G1265800 (not annotated) were methylated in all three contexts in in vitro shoots. These DNA methylation results suggest that epigenetic changes may contribute to the adaptation of apple to environmental changes by modifying the epigenome and thereby gene expression.
Tárgyszavak:Természettudományok Biológiai tudományok idegen nyelvű folyóiratközlemény külföldi lapban
Epigenetic
Malus sp.
Tissue culture
Whole-genome bisulfite sequencing
Megjelenés:Journal Of Plant Physiology. - 239 (2019), p. 18-27. -
További szerzők:Dobránszki Judit (1967-) (biológus) Kiss Erzsébet Teixeira da Silva, Jaime A. Posta Katalin (1961-) (biológia-kémia szakos tanár) Hidvégi Norbert (1986-)
Pályázati támogatás:20428-3/2018/FEKUTSTRAT
FIKP
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10.

001-es BibID:BIBFORM087335
035-os BibID:(cikkazonosító)1797294
Első szerző:Hidvégi Norbert
Cím:Mining sequences with similarity to XTH genes in the Solanum tuberosum L. transcriptome: introductory step for identifying homologous XTH genes / Norbert Hidvégi, Andrea Gulyás, Judit Dobránszki, Jaime A. Teixeira da Silva
Dátum:2020
ISSN:1559-2316 1559-2324
Megjegyzések:The xyloglucan endotransglucosylase/hydrolase (XTH) genes in Arabidopsis thaliana (L.) Heynh. form part of a group of mechano-stimulated genes and play an important role in abiotic stress tolerance. Mining the RNAseq transcriptomic database of 40,430 potato (Solanum tuberosum L.) genes based on functional annotation and homology search, our objective was to discover potentially homologous XTH genes. A Gene Ontology-based XTH homology search and functional annotation discovered, from among the 33 A. thaliana (AtXTH) and 25 tomato (Solanum lycopersicum L.) (SlXTH) XTH genes, 35 gene sequences corresponding to 20 AtXTH genes and 40 gene sequences corresponding to 21 SlXTH genes, respectively. Thirteen sequences corresponding to 11 putative XTH genes in potato, named as StXTH after SlXTH genes, were significantly up- or down-regulated in response to ultrasound. These putative StXTH genes in potato can serve for future functional genetic analyses.
Tárgyszavak:Agrártudományok Növénytermesztési és kertészeti tudományok idegen nyelvű folyóiratközlemény külföldi lapban
folyóiratcikk
Abiotic stress
mechanostimulus
potato
putative homology
transcriptome
ultrasound
xyloglucan endotransglucosylase/hydrolase
Megjelenés:Plant Signaling and Behavior. - 15 : 10 (2020), p. 1-8. -
További szerzők:Gulyás Andrea (1985-) Dobránszki Judit (1967-) (biológus) Teixeira da Silva, Jaime A.
Pályázati támogatás:NKFIH-1150-6/2019
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11.

001-es BibID:BIBFORM008901
Első szerző:Magyarné Tábori Katalin (kertészmérnök)
Cím:The role of cytokinins in shoot organogenesis in apple / Katalin Magyar-Tábori, Judit Dobránszki, Jaime A. Teixeira da Silva, Sean M. Bulley, Ildikó Hudák
Dátum:2010
ISSN:0167-6857
Tárgyszavak:Agrártudományok Növénytermesztési és kertészeti tudományok idegen nyelvű folyóiratközlemény külföldi lapban
folyóiratcikk
Megjelenés:Plant Cell, Tissue and Organ Culture. - 101 : 3 (2010), p. 251-267. -
További szerzők:Dobránszki Judit (1967-) (biológus) Teixeira da Silva, Jaime A. Bulley, Sean M. Hudák Ildikó (1978-) (biológia környezettan tanár)
Internet cím:DOI
elektronikus változat
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12.

001-es BibID:BIBFORM104425
035-os BibID:(WOS)000473237300018 (Scopus)85064910278
Első szerző:Teixeira da Silva, Jaime A.
Cím:Editors Should Declare Conflicts of Interest / Jaime A. Teixeira da Silva, Judit Dobránszki, Radha Holla Bhar, Charles T. Mehlman
Dátum:2019
ISSN:1176-7529 1872-4353
Megjegyzések:Editors have increasing pressure as scholarly publishing tries to shore up trust and reassure academics and the public that traditional peer review is robust, fail-safe, and corrective. Hidden conflicts of interest (COIs) may skew the fairness of the publishing process because they could allow the status of personal or professional relationships to positively influence the outcome of peer review or reduce the processing period of this process. Not all authors have such privileged relationships. In academic journals, editors usually have very specialized skills and are selected as agents of trust, entrusted with the responsibility of serving as quality control gate-keepers during peer review. In many cases, editors form extensive networks, either with other professionals, industry, academic bodies, journals, or publishers. Such networks and relationships may influence their decisions or even their subjectivity towards a set of submitting authors, paper, or institute, ultimately influencing the peer review process. These positions and relationships are not simply aspects of a curriculum, they are potential COIs. Thus, on the editorial board of all academic journals, editors should carry a COI statement that reflects their past history, as well as actual relationships and positions that they have, as these may influence their editorial functions.
Tárgyszavak:Bölcsészettudományok Filozófiai tudományok idegen nyelvű folyóiratközlemény külföldi lapban
folyóiratcikk
Accountability
Editorial responsibility
Peer review
Quality control
Transparency
Megjelenés:Journal of Bioethical Inquiry. - 16 : 2 (2019), p. 279-298. -
További szerzők:Dobránszki Judit (1967-) (biológus) Bhar, Radha Holla Mehlman, Charles T.
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