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001-es BibID:	BIBFORM076618
035-os BibID:	(cikkazonosító)e0204653 (WOS)000446383500033 (Scopus)85054465081
Első szerző:	Ashrafzadeh, Mohammad Reza
Cím:	Large-scale mitochondrial DNA analysis reveals new light on the phylogeography of Central and Eastern-European Brown hare (Lepus europaeus Pallas, 1778) / Mohammad Reza Ashrafzadeh, Mihajla Djan, László Szendrei, Algimantas Paulauskas, Massimo Scandura, Zoltán Bagi, Daniela Elena Ilie, Nikoloz Kerdikoshvili, Panek Marek, Noémi Soós, Szilvia Kusza
Dátum:	2018
ISSN:	1932-6203
Megjegyzések:	European brown hare, Lepus europaeus, from Central and Eastern European countries (Hungary, Poland, Serbia, Lithuania, Romania, Georgia and Italy) were sampled, and phylogenetic analyses were carried out on two datasets: 1.) 137 sequences (358 bp) of control region mtDNA; and 2.) 105 sequences of a concatenated fragment (916 bp), including the cytochrome b, tRNA-Thr, tRNA-Pro and control region mitochondrial DNA. Our sequences were aligned with additional brown hare sequences from GenBank. A total of 52 and 51 haplotypes were detected within the two datasets, respectively, and assigned to two previously described major lineages: Anatolian/Middle Eastern (AME) and European (EUR). Furthermore, the European lineage was divided into two subclades including South Eastern European (SEE) and Central European (CE). Sympatric distribution of the lineages of the brown hare in South-Eastern and Eastern Europe revealed contact zones there. BAPS analysis assigned sequences from L. europaeus to five genetic clusters, whereas CE individuals were assigned to only one cluster, and AME and SEE sequences were each assigned to two clusters. Our findings uncover numerous novel haplotypes of Anatolian/Middle Eastern brown hare outside their main range, as evidence for the combined influence of Late Pleistocene climatic fluctuations and anthropogenic activities in shaping the phylogeographic structure of the species. Our results support the hypothesis of a postglacial brown hare expansion from Anatolia and the Balkan Peninsula to Central and Eastern Europe, and suggest some slight introgression of individual haplotypes from L. timidus to L. europaeus.
Tárgyszavak:	Agrártudományok Állattenyésztési tudományok idegen nyelvű folyóiratközlemény külföldi lapban folyóiratcikk
Megjelenés:	Plos One. - 13 : 10 (2018), p. 1-20. -
További szerzők:	Djan, Mihajla (biológus) Szendrei László (1964-) (agrármérnök) Paulauskas, Algimantas Scandura, Massimo Bagi Zoltán (1987-) (természetvédelmi mérnök, állatgenetika) Ilie, Daniela Elena Kerdikoshvili, Nikoloz Marek, Panek Soós Noémi (1981-) (biológus) Kusza Szilvia (1979-) (agrármérnök)
Pályázati támogatás:	EFOP-3.6.3-VEKOP-16-2017-00008 EFOP
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001-es BibID:	BIBFORM079290
035-os BibID:	(cikkazonosító)17372 (WOS)000451182100044 (Scopus)85057278145 (PMID)30478374 (PMCID)PMC6255867
Első szerző:	Iacolina, Laura
Cím:	Hotspots of recent hybridization between pigs and wild boars in Europe / Laura Iacolina, Cino Pertoldi, Marcel Amills, Szilvia Kusza, Hendrik-Jan Megens, Valentin Adrian Bâlteanu, Jana Bakan, Vlatka Cubric-Curic, Ragne Oja, Urmas Saarma, Massimo Scandura, Nikica Šprem, Astrid Vik Stronen
Dátum:	2018
ISSN:	2045-2322
Megjegyzések:	After a strong demographic decline before World War II, wild boar populations are expanding and the species is now the second-most abundant ungulate in Europe. This increase raises concerns due to wild boar impact on crops and natural ecosystems and as potential vector of diseases. Additionally, wild boar can hybridize with domestic pigs, which could increase health risks and alter wild boar adaptive potential. We analysed 47,148 Single Nucleotide Polymorphisms in wild boar from Europe (292) and the Near East (16), and commercial (44) and local (255) pig breeds, to discern patterns of hybridization across Europe. We identified 33 wild boars with more than 10% domestic ancestry in their genome, mostly concentrated in Austria, Bosnia and Herzegovina, Bulgaria and Serbia. This difference is probably due to contrasting practices, with free-ranging vs. industrial farming but more samples would be needed to investigate larger geographic patterns. Our results suggest hybridization has occurred over a long period and is still ongoing, as we observed recent hybrids. Although wild and domestic populations have maintained their genetic distinctiveness, potential health threats raise concerns and require implementation of management actions and farming practices aimed at reducing contact between wild and domestic pigs.
Tárgyszavak:	Agrártudományok Állattenyésztési tudományok idegen nyelvű folyóiratközlemény külföldi lapban
Megjelenés:	Scientific Reports. - 8 : 1 (2018), p. 1-10. -
További szerzők:	Pertoldi, Cino Amills, Marcel Kusza Szilvia (1979-) (agrármérnök) Megens, Hendrik-Jan Balteanu, Valentin Adrian Bakan, Jana Cubric-Curic, Vlatka Oja, Ragne Saarma, Urmas Scandura, Massimo Sprem, Nikica Stronen, Astrid Vik
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001-es BibID:	BIBFORM089799
035-os BibID:	(WOS)000478171500001 (Scopus)85073065418
Első szerző:	Khederzadeh, Saber
Cím:	Maternal genomic variability of the wild boar (Sus scrofa) reveals the uniqueness of East-Caucasian and Central Italian populations / Saber Khederzadeh, Szilvia Kusza, Cui-Ping Huang, Nickolay Markov, Massimo Scandura, Elmar Babaev, Nikica Šprem, Ivan V. Seryodkin, Ladislav Paule, Ali Esmailizadeh, Hai-Bing Xie, Ya-Ping Zhang
Dátum:	2019
ISSN:	2045-7758
Megjegyzések:	The phylogeography of the European wild boar was mainly determined by postglacial recolonization patterns from Mediterranean refugia after the last ice age. Here we present the first analysis of SNP polymorphism within the complete mtDNA genome of West Russian (n = 8), European (n = 64), and North African (n = 5) wild boar. Our analyses provided evidence of unique lineages in the East-Caucasian (Dagestan) region and in Central Italy. A phylogenetic analysis revealed that these lineages are basal to the other European mtDNA sequences. We also show close connection between the Western Siberian and Eastern European populations. Also, the North African samples were clustered with the Iberian population. Phylogenetic trees and migration modeling revealed a high proximity of Dagestan sequences to those of Central Italy and suggested possible gene flow between Western Asia and Southern Europe which was not directly related to Northern and Central European lineages. Our results support the presence of old maternal lineages in two Southern glacial refugia (i.e., Caucasus and the Italian peninsula), as a legacy of an ancient wave of colonization of Southern Europe from an Eastern origin.
Tárgyszavak:	Agrártudományok Állattenyésztési tudományok idegen nyelvű folyóiratközlemény külföldi lapban folyóiratcikk Caucasus migration modeling phylogeny whole mtDNA
Megjelenés:	Ecology and Evolution. - 9 : 17 (2019), p. 9467-9478. -
További szerzők:	Kusza Szilvia (1979-) (agrármérnök) Huang, Cui-Ping Markov, Nickolay Scandura, Massimo Babaev, Elmar Sprem, Nikica Seryodkin, Ivan V. Paule, Ladislav Esmailizadeh, Ali Xie, Hai-Bing Zhang, Ya-Ping
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001-es BibID:	BIBFORM059218
Első szerző:	Kusza Szilvia (agrármérnök)
Cím:	Contemporary Genetic Structure, Phylogeography and Past Demographic Processes of Wild Boar Sus scrofa Population in Central and Eastern Europe / Szilvia Kusza, Tomasz Podgórski, Massimo Scandura, Tomasz Borowik, András Jávor, Vadim E. Sidorovich, Aleksei N. Bunevich, Mikhail Kolesnikov, Bogumiła Jędrzejewska
Dátum:	2014
ISSN:	1932-6203
Megjegyzések:	The wild boar (Sus scrofa) is one of the most widely distributed mammals in Europe. Its demography was affected by various events in the past and today populations are increasing throughout Europe. We examined genetic diversity, structure and population dynamics of wild boar in Central and Eastern Europe. MtDNA control region (664 bp) was sequenced in 254 wild boar from six countries (Poland, Hungary, Belarus, Ukraine, Moldova and the European part of Russia). We detected 16 haplotypes, all known from previous studies in Europe; 14 of them belonged to European 1 (E1) clade, including 13 haplotypes from E1-C and one from E1-A lineages. Two haplotypes belonged respectively to the East Asian and the Near Eastern clade. Both haplotypes were found in Russia and most probably originated from the documented translocations of wild boar. The studied populations showed moderate haplotype (0.714?0.023) and low nucleotide diversity (0.003?0.002). SAMOVA grouped the genetic structuring of Central and Eastern European wild boar into three subpopulations, comprising of: (1) north-eastern Belarus and the European part of Russia, (2) Poland, Ukraine, Moldova and most of Belarus, and (3) Hungary. The multimodal mismatch distribution, Fu's Fs index, Bayesian skyline plot and the high occurrence of shared haplotypes among populations did not suggest strong demographic fluctuations in wild boar numbers in the Holocene and pre-Holocene times. This study showed relatively weak genetic diversity and structure in Central and Eastern European wild boar populations and underlined gaps in our knowledge on the role of southern refugia and demographic processes shaping genetic diversity of wild boar in this part of Europe.
Tárgyszavak:	Agrártudományok Állattenyésztési tudományok idegen nyelvű folyóiratközlemény külföldi lapban MITOCHONDRIAL-DNA PIG DOMESTICATION WESTERN EURASIA ANCIENT DNA DIVERSITY COLONIZATION POLYMORPHISM EVOLUTION SOFTWARE
Megjelenés:	Plos One. - 9 : 3 (2014), p. e91401-. -
További szerzők:	Podgórski, Tomasz Scandura, Massimo Borowik, Tomasz Jávor András (1952-) (agrármérnök) Sidorovich, Vadim E. Bunevich, Aleksei N. Kolesnikov, Mikhail Jędrzejewska, Bogumiła
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