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001-es BibID:	BIBFORM015619
Első szerző:	Fábián Ákos István (aneszteziológus)
Cím:	Strength in numbers : effects of Acceptor Abundance on FRET Efficiency / Ákos I. Fábián, Tünde Rente, János Szöllősi, László Mátyus, Attila Jenei
Dátum:	2010
Megjegyzések:	Fluorescence resonance energy transfer (FRET) is a strongly distance-dependent process between a donor and an acceptor molecule, which can be used for sensitive distance measurements and characterization of molecular interactions at the nanometer level. The original mathematical description of this process, however, is only valid for the interaction of one donor with one acceptor. This criterion is not always met, especially in biological systems, where multiple structures can interact simultaneously, often making distance estimations based on transfer efficiency values error-prone. Herein we investigate how the interaction of multiple acceptors and donors influences the transfer efficiency value in an intramolecular cellular FRET system by manipulating the fluorophore/protein ratio of the fluorophore-conjugated antibodies. We show that the labeling ratio of the acceptor has the largest influence on measured transfer efficiency and decreasing or increasing the acceptor labeling ratio can be utilized to manipulate the FRET response of the acceptor-donor pair and therefore is a tool for optimizing sensitivity of FRET measurements
Tárgyszavak:	Orvostudományok Elméleti orvostudományok idegen nyelvű folyóiratközlemény külföldi lapban Antibodies article BINDING-SITE BY-CELL BASIS cell surface receptors chemistry Energy Transfer Molekuláris Medicina FLOW Flow Cytometry Fluorescence FLUORESCENCE RESONANCE Fluorescence Resonance Energy Transfer FRET HIGH-THROUGHPUT FRET Hungary IMAGING MICROSCOPY LIVING CELLS molecular interaction PROTEIN INTERACTIONS resonance energy transfer RESONANCE ENERGY-TRANSFER SPECTROSCOPIC RULER OTKA::1 MAB::3.1 egyetemen (Magyarországon) készült közlemény
Megjelenés:	Chemphyschem. - 11 : 17 (2010), p. 3713-3721. -
További szerzők:	Rente Tünde Szöllősi János (1953-) (biofizikus) Mátyus László (1956-) (biofizikus) Jenei Attila (1966-) (biofizikus)
Pályázati támogatás:	TÁMOP-4.2.1/B-09/1/KONV-2010-0007 TÁMOP Membrán dinamika K 77600 OTKA K 68763 OTKA TÁMOP-4.2.2-08/1-2008-0019 TÁMOP
Internet cím:	Intézményi repozitóriumban (DEA) tárolt változat DOI
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001-es BibID:	BIBFORM004566
Első szerző:	Kovács Tamás (szülész-nőgyógyász, humángenetikus)
Cím:	DNA flow cytometry of human spermatozoa : consistent stoichiometric staining of sperm DNA using a novel decondensation protocol / Kovács T., Békési G., Fábián A., Rákosy Z., Horváth G., Mátyus L., Balázs M., Jenei A.
Dátum:	2008
Megjegyzések:	Rapid flow cytometric measurement of the frequency of aneuploid human sperms is in increasing demand but development of an exploitable method is hindered by difficulties of stoichiometric staining of sperm DNA. An aggressive decondensation protocol is needed after which cell integrity still remains intact. We used flow cytometry to examine the effect of lithium diiodosalicylate (LIS, chaotropic agent) on fluorescence intensity of propidium iodide-treated human spermatozoa from 10 normozoospermic men. When flow cytometric identification of diploid spermatozoa was achieved, validation was performed after sorting by three-color FISH. In contrast with the extremely variable histograms of nondecondensed sperms, consistent identification of haploid and diploid spermatozoa was possible if samples were decondensed with LIS prior to flow cytometry. A 76-fold enrichment of diploid sperms was observed in the sorted fractions by FISH. A significant correlation was found between the proportion of sorted cells and of diploid sperms by FISH. Application of LIS during the preparation of sperm for flow cytometry appears to ensure the stoichiometric staining of sperm DNA, making quantification of aneuploid sperm percentage possible. To our knowledge this is the first report in terms of separating spermatozoa with confirmedly abnormal chromosomal content. High correlation between the proportion of cells identified as having double DNA content by flow cytometry and diploid sperm by FISH allows rapid calculation of diploidy rate. Copyright 2008 International Society for Advancement of Cytometry.
Tárgyszavak:	Orvostudományok Elméleti orvostudományok idegen nyelvű folyóiratközlemény külföldi lapban diploid spermatozoa aneuploid spermatozoa propidium iodide lithium diiodosalicylate egyetemen (Magyarországon) készült közlemény
Megjelenés:	Cytometry. Part A 73 : 10 (2008), p. 965-970. -
További szerzők:	Békési Gyöngyi Fábián Ákos István (1982-) (aneszteziológus) Rákosy Zsuzsa (1978-) (sejtbiológus, molekuláris biológus, genetikus) Horváth Gábor (1974-) (biofizikus) Mátyus László (1956-) (biofizikus) Balázs Margit (1952-) (sejtbiológus, molekuláris genetikus) Jenei Attila (1966-) (biofizikus)
Internet cím:	elektronikus változat DOI elektronikus változat
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001-es BibID:	BIBFORM004886
Első szerző:	Szentesi Gergely (kémia-fizika tanár)
Cím:	Computer program for analyzing donor photobleaching FRET image series / Szentesi, G., Vereb, G., Horvath, G., Bodnar, A., Fabian, A., Matko, J., Gaspar, R., Damjanovich, S., Matyus, L., Jenei, A.
Dátum:	2005
ISSN:	1552-4922
Megjegyzések:	The photobleaching fluorescence resonance energy transfer (pbFRET) technique is a spectroscopic method to measure proximity relations between fluorescently labeled macromolecules using digital imaging microscopy. To calculate the energy transfer values one has to determine the bleaching time constants in pixel-by-pixel fashion from the image series recorded on the donor-only and donor and acceptor double-labeled samples. Because of the large number of pixels and the time-consuming calculations, this procedure should be assisted by powerful image data processing software. There is no commercially available software that is able to fulfill these requirements. METHODS: New evaluation software was developed to analyze pbFRET data for Windows platform in National Instrument LabVIEW 6.1. This development environment contains a mathematical virtual instrument package, in which the Levenberg-Marquardt routine is also included. As a reference experiment, FRET efficiency between the two chains (beta2-microglobulin and heavy chain) of major histocompatibility complex (MHC) class I glycoproteins and FRET between MHC I and MHC II molecules were determined in the plasma membrane of JY, human B lymphoma cells. RESULTS: The bleaching time constants calculated on pixel-by-pixel basis can be displayed as a color-coded map or as a histogram from raw image format. CONCLUSION: In this report we introduce a new version of pbFRET analysis and data processing software that is able to generate a full analysis pattern of donor photobleaching image series under various conditions.
Tárgyszavak:	Orvostudományok Elméleti orvostudományok idegen nyelvű folyóiratközlemény külföldi lapban Algorithms analysis beta 2-Microglobulin Biophysics Cell Line,Tumor Cells Energy Transfer Fluorescence Fluorescence Resonance Energy Transfer Glycoproteins Histocompatibility Antigens Human Humans Hungary Lymphoma Major Histocompatibility Complex metabolism methods Microscopy Photobleaching Research Software Support egyetemen (Magyarországon) készült közlemény
Megjelenés:	Cytometry. Part A. - 67 : 2 (2005), p. 119-128. -
További szerzők:	Vereb György (1965-) (biofizikus, orvos) Horváth Gábor (1974-) (biofizikus) Dóczy-Bodnár Andrea (1970-) (biofizikus) Fábián Ákos István (1982-) (aneszteziológus) Matkó János (1952-) (biológus) Gáspár Rezső (1944-) (biofizikus) Damjanovich Sándor (1936-2017) (biofizikus) Mátyus László (1956-) (biofizikus) Jenei Attila (1966-) (biofizikus)
Internet cím:	elektronikus változat DOI
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