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1.

001-es BibID:BIBFORM101096
Első szerző:Dobránszki Judit (biológus)
Cím:Transcription Profile of Potato (Solanum tuberosum L.) Growing In Vitro / Judit Dobránszki, Norbert Hidvégi, Andrea Gulyás, Bianka Tóth, Jaime A. Teixeira da Silva
Dátum:2021
ISSN:0721-7595
Tárgyszavak:Agrártudományok Növénytermesztési és kertészeti tudományok idegen nyelvű folyóiratközlemény külföldi lapban
folyóiratcikk
Megjelenés:Journal Of Plant Growth Regulation. - 40 : 2 (2021), p. 749-760. -
További szerzők:Hidvégi Norbert (1986-) Gulyás Andrea (1985-) Tóth Bianka (1988-) (biológus) Teixeira da Silva, Jaime A.
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2.

001-es BibID:bibEBI00026258
Első szerző:Dobránszki Judit (biológus)
Cím:Abiotic stress elements in in vitro potato (Solanum tuberosum L.) exposed to air-based and liquid-based ultrasound: A comparative transcriptomic assessment / Judit Dobránszki, Norbert Hidvégi, Andrea Gulyás, Bianka Tóth, Jaime A. Teixeira da Silva
Dátum:2020
ISSN:0079-6107
Megjegyzések:Ultrasound (US) can modify the plant growth and development. Previous assessments of the transcriptome of in vitro potato (Solanum tuberosum L.) exposed to US transmitted through air (AB-US) or liquid (PE-US) revealed the up- or down-regulation of several stress-related differentially expressed genes (DEGs) related to abiotic stress. In a bid to better characterize stress-related elements over a four-week period, the transcriptome of AB-US was compared to that of PE-US. When comparing the controls of both treatments, DEGs related to hypoxia were not detected. Nevertheless, hypoxia-related DEGs were detected in the combination of liquid medium and ultrasonication. DEGs coding for chitinase, peroxidase, glutathione-S-transferase, transcription factors of ERF (ethylene responsive factor), DREB (dehydration-responsive element-binding), WRKY and MYB were also significantly highly expressed in PE-US, relative to AB-US. Up- and down-regulation of DEGs related to metabolic processes, and enzymes of the antioxidant system also confirm that PE-US is a more acute abiotic stress than AB-US.
Tárgyszavak:Agrártudományok Növénytermesztési és kertészeti tudományok idegen nyelvű folyóiratközlemény külföldi lapban
folyóiratcikk
Abiotic stress
Differentially expressed genes
Heat shock proteins
Plant growth
Megjelenés:Progress In Biophysics & Molecular Biology. - 158 (2020), p. 47-56. -
További szerzők:Hidvégi Norbert (1986-) Gulyás Andrea (1985-) Tóth Bianka (1988-) (biológus) Teixeira da Silva, Jaime A.
Pályázati támogatás:NKFIH-1150-6/2019
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3.

001-es BibID:BIBFORM078531
035-os BibID:(WoS)000472509400011 (Scopus)85065183537
Első szerző:Dobránszki Judit (biológus)
Cím:mRNA transcription profile of potato (Solanum tuberosum L.) exposed to ultrasound during different stages of in vitro plantlet development / Judit Dobránszki, Norbert Hidvégi, Andrea Gulyás, Jaime A. Teixeira da Silva
Dátum:2019
ISSN:0167-4412 1573-5028
Megjegyzések:Ultrasound (US) can influence plant growth and development. To better understand the genetic mechanism underlying the physiological response of potato to US, single-node segments of four-week-old in vitro plantlets were subjected to US at 35 kHz for 20 min. Following mRNA purification, 10 cDNA libraries were assessed by RNA-seq. Significantly differentially expressed genes (DEGs) were categorized by gene ontology or Kyoto Encyclopedia of Genes and Genomes identifiers. The expression intensity of 40,430 genes was studied. Several hundred DEGs associated with biosynthesis, carbohydrate metabolism and catabolism, cellular protein modification, and response to stress, and which were expressed mainly in the extracellular region, nucleus, and plasma membrane, were either up- or down-regulated in response to US. RT-qPCR was used to validate RNA-seq data of 10 highly up- or down-regulated DEGs, and both Spearman and Pearson correlations between SeqMonk LFC and RT-qPCR LFC were highly positive (0.97). This study examines how some processes evolved over time (0 h, 24 h, 48 h, 1 week and 4 weeks) after an abiotic stress (US) was imposed on in vitro potato explants, and provides clues to the temporal dynamics in DEG-based enzyme functions in response to this stress. Despite this abiotic stress, plantlets survived.
Tárgyszavak:Természettudományok Biológiai tudományok idegen nyelvű folyóiratközlemény külföldi lapban
folyóiratcikk
Abiotic stress
Antioxidant
DEG
Enzyme
Plant growth
Ultrasonication
Wounding
Megjelenés:Plant Molecular Biology. - 100 : 4-5 (2019), p. 511-525. -
További szerzők:Hidvégi Norbert (1986-) Gulyás Andrea (1985-) Teixeira da Silva, Jaime A.
Pályázati támogatás:20428-3/2018/FEKUTSTRAT
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4.

001-es BibID:BIBFORM079121
Első szerző:Gulyás Andrea
Cím:Changes in DNA methylation pattern of apple long-term in vitro shoot culture and acclimatized plants / Andrea Gulyás, Judit Dobránszki, Erzsébet Kiss, Jaime A. Teixeira da Silva, Katalin Posta, Norbert Hidvég
Dátum:2019
ISSN:0176-1617
Megjegyzések:DNA methylation is a process of epigenetic modification that can alter the functionality of a genome. Using whole-genome bisulfite sequencing, this study quantify the level of DNA methylation in the epigenomes of two diploid apple (Malus x domestica) scion cultivars ('McIntosh' and 'Húsvéti rozmaring') derived from three environmental conditions: in vivo mother plants in an orchard, in vitro culture, and acclimatized in vitro plants. The global DNA methylation levels were not dependent on the source of plant material, and the average level of DNA methylation was 49.77%, 34.65% and 8.77% in CpG, CHG and CHH contexts, respectively. Significant differences in DNA methylation were identified in 586 (specifically 334, 201 and 131 in CpG, CHG and CHH contexts, respectively) out of 45,116 genes, including promoter and coding sequences. These were classified as differentially methylated genes (DMGs). This is a 1.3% difference in the level of DNA methylation of genes in response to a change in the environment. Differential methylation was visualised by MA plots and functional genomic maps were established for biological processes, molecular functions and cellular components. When the DMGs were considered, in vitro tissue culture resulted in the highest level of methylation, but it was lower in acclimatized in vitro plants which was similar to that in the mother tree. Methylation patterns of the two scions differed, indicating cultivar-specific epigenetic regulation of gene expression during adaptation to various environments. After selecting genes that displayed differences larger than ?10% in CpG and CHG contexts, or larger than ?1.35% in the CHH context from among the DMGs, they were annotated in Blast2?GO v5.1.12 for Gene Ontology. DMGs identified as MD07G1113000 (protein transport), MD08G1041600 (extracellular space), MD09G1054800 (phosphatidic acid binding), and MD10G1265800 (not annotated) were methylated in all three contexts in in vitro shoots. These DNA methylation results suggest that epigenetic changes may contribute to the adaptation of apple to environmental changes by modifying the epigenome and thereby gene expression.
Tárgyszavak:Természettudományok Biológiai tudományok idegen nyelvű folyóiratközlemény külföldi lapban
Epigenetic
Malus sp.
Tissue culture
Whole-genome bisulfite sequencing
Megjelenés:Journal Of Plant Physiology. - 239 (2019), p. 18-27. -
További szerzők:Dobránszki Judit (1967-) (biológus) Kiss Erzsébet Teixeira da Silva, Jaime A. Posta Katalin (1961-) (biológia-kémia szakos tanár) Hidvégi Norbert (1986-)
Pályázati támogatás:20428-3/2018/FEKUTSTRAT
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5.

001-es BibID:BIBFORM104321
Első szerző:Hidvégi Norbert
Cím:Complementation of wild strawberry (Fragaria vesca L.) SPATULA (FvSPT) and SPIRAL (FvSPR) genes in Arabidopsis thaliana / Norbert Hidvégi, Andrea Gulyás Andrea, Jaime A Teixeira da Silva, Katalin Posta Katalin, Erzsébet Kiss
Dátum:2020
ISSN:2064-7816 2064-9479
Megjegyzések:This study assessed the function of genes involved in wild strawberry (Fragaria vescaL.) fruitdevelopment and maturation to better understand the mechanism of non-climacteric fruit ripening.SPATULA(FvSPT) andSPIRAL(FvSPR) genes ofFragaria vescadisplayed differential expression between the greenand red ripening stages.SPT, which encodes a bHLH transcription factor, was characterized inArabidopsisthalianaL. where its recessive mutation caused degenerative carpel and fruit development. ThesptmutantofA. thalianahad shorter, smaller, and wider spatula-shaped siliques than the wild type.SPTwas expressedthroughout the development of marginal and transmission tract tissues, confirming its role in regulating thegrowth of these tissues. TwoA. thaliana SPIRALgenes,SPR1andSPR2, are required for directional controlof cell elongation. Recessive mutations in either of these genes decreased anisotropic growth of endodermaland cortical root cells and etiolated hypocotyls and caused right-handed helical growth in epidermal cells.The strawberrySPATULA(FvSPT) andSPIRAL(FvSPR) genes were amplified andsptandsprmutantA.thalianaplants were transformed withFvSPT::pGWB401,FvSPR1-1::pGWB401andFvSPR1-2::pGWB401vector constructs. Silique length and seed number/silique in theA. thaliana sptmutant were effectively com-plemented byFvSPTwhereassprwas almost fully complemented byFvSPR1-2, but not byFvSPR1-1.
Tárgyszavak:Agrártudományok Növénytermesztési és kertészeti tudományok idegen nyelvű folyóiratközlemény hazai lapban
folyóiratcikk
bHLHgene
spatula shape-silique
helical root growth
sprandsptmutants
Megjelenés:Columella. - 7 : 1 (2020), p. 23-34. -
További szerzők:Gulyás Andrea (1985-) Teixeira da Silva, Jaime A. Posta Katalin (1961-) (biológia-kémia szakos tanár) Kiss Erzsébet
Pályázati támogatás:NKFIH-1150-6/2019
Egyéb
NKFIH-1159-6/2019
Egyéb
OTKA- K-101195
OTKA
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6.

001-es BibID:BIBFORM098820
Első szerző:Hidvégi Norbert
Cím:Promoter analysis of the SPATULA (FvSPT) and SPIRAL (FvSPR) genes in the woodland diploid strawberry (Fragaria vesca L.) / Norbert Hidvégi, Andrea Gulyás, Jaime A. Teixeira da Silva1, Adhityo Wicaksono, Erzsébet Kiss4
Dátum:2021
ISSN:2676-8615 2676-8607
Tárgyszavak:Agrártudományok Növénytermesztési és kertészeti tudományok idegen nyelvű folyóiratközlemény külföldi lapban
folyóiratcikk
Megjelenés:Biologia Futura. - 72 : 3 (2021), p. 373-384. -
További szerzők:Gulyás Andrea (1985-) Teixeira da Silva, Jaime A. Wicaksono, Adhityo Kiss Erzsébet
Pályázati támogatás:NKFIH-1150-6/2019
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7.

001-es BibID:BIBFORM087335
035-os BibID:(cikkazonosító)1797294
Első szerző:Hidvégi Norbert
Cím:Mining sequences with similarity to XTH genes in the Solanum tuberosum L. transcriptome: introductory step for identifying homologous XTH genes / Norbert Hidvégi, Andrea Gulyás, Judit Dobránszki, Jaime A. Teixeira da Silva
Dátum:2020
ISSN:1559-2316 1559-2324
Megjegyzések:The xyloglucan endotransglucosylase/hydrolase (XTH) genes in Arabidopsis thaliana (L.) Heynh. form part of a group of mechano-stimulated genes and play an important role in abiotic stress tolerance. Mining the RNAseq transcriptomic database of 40,430 potato (Solanum tuberosum L.) genes based on functional annotation and homology search, our objective was to discover potentially homologous XTH genes. A Gene Ontology-based XTH homology search and functional annotation discovered, from among the 33 A. thaliana (AtXTH) and 25 tomato (Solanum lycopersicum L.) (SlXTH) XTH genes, 35 gene sequences corresponding to 20 AtXTH genes and 40 gene sequences corresponding to 21 SlXTH genes, respectively. Thirteen sequences corresponding to 11 putative XTH genes in potato, named as StXTH after SlXTH genes, were significantly up- or down-regulated in response to ultrasound. These putative StXTH genes in potato can serve for future functional genetic analyses.
Tárgyszavak:Agrártudományok Növénytermesztési és kertészeti tudományok idegen nyelvű folyóiratközlemény külföldi lapban
folyóiratcikk
Abiotic stress
mechanostimulus
potato
putative homology
transcriptome
ultrasound
xyloglucan endotransglucosylase/hydrolase
Megjelenés:Plant Signaling and Behavior. - 15 : 10 (2020), p. 1-8. -
További szerzők:Gulyás Andrea (1985-) Dobránszki Judit (1967-) (biológus) Teixeira da Silva, Jaime A.
Pályázati támogatás:NKFIH-1150-6/2019
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8.

001-es BibID:BIBFORM087796
Első szerző:Teixeira da Silva, Jaime A.
Cím:Shoot tip necrosis of in vitro plant cultures: a reappraisal of possible causes and solutions / Jaime A. Teixeira da Silva, Esmaeil Nezami-Alanagh, María E. Barreal, Mafatlal M. Kher, Adhityo Wicaksono, Andrea Gulyás, Norbert Hidvégi, Katalin Magyar-Tábori, Nóra Mendler-Drienyovszki, László Márton, Mariana Landín, Pedro Pablo Gallego, John A. Driver, Judit Dobránszki
Dátum:2020
ISSN:0032-0935 1432-2048
Megjegyzések:Shoot tip necrosis is a physiological condition and disorder that can arise in plantlets or shoots in vitro that results in death of the shoot tip. This condition, which can spread basipetally and affect the emergence of axillary shoots from buds lower down the stem, is due to the cessation of apical dominance. STN can occur at both shoot multiplication and rooting stages. One of the most common factors that cause STN is nutrient deficiency or imbalance. Moreover, the presence or absence of plant growth regulators (auxins or cytokinins) at specific developmental stages may impact STN. The cytokinin to auxin ratio within an in vitro plant can be modified by varying the concentration of cytokinins used in the culture medium. The supply of nutrients to in vitro shoots or plantlets might also affect their hormonal balance, thus modifying the occurrence of STN. High relative humidity within culture vessels and hyperhydricity are associated with STN. An adequate supply of calcium as the divalent cation (Ca2+) can hinder STN by inhibiting the accumulation of phenolic compounds and thus programmed cell death. Moreover, the level of Ca2+ affects auxin transport and ethylene production, and higher ethylene production, which can occur as a result of high relative humidity in or poor ventilation of the in vitro culture vessel, induces STN. High relative humidity can decrease the mobility of Ca2+ within a plant, resulting in Ca2+ deficiency and STN. STN of in vitro shoots or plantlets can be halted or reversed by altering the basal medium, mainly the concentration of Ca2+, adjusting the levels of auxins or cytokinins, or modifying culture conditions. This review examines the literature related to STN, seeks to discover the associated factors and relations between them, proposes practical solutions, and attempts to better understand the mechanism(s) underlying this condition in vitro.
Tárgyszavak:Agrártudományok Növénytermesztési és kertészeti tudományok idegen nyelvű folyóiratközlemény külföldi lapban
folyóiratcikk
Boron
Calcium
Chloride
In vitro shoots
Mineral nutrient deficiency
Physiological disorder
Plant growth regulators
Megjelenés:Planta. - 252 : 3 (2020), p. 1-35. -
További szerzők:Nezami-Alanagh, Esmaeil Barreal, María E. Kher, Mafatlal M. Wicaksono, Adhityo Gulyás Andrea (1985-) Hidvégi Norbert (1986-) Magyarné Tábori Katalin (1965-) (kertészmérnök) Mendlerné Drienyovszki Nóra (1977-) (agrármérnök) Márton László Landín, Mariana Gallego, Pedro Pablo Driver, John A. Dobránszki Judit (1967-) (biológus)
Pályázati támogatás:NKFIH-1150-6/2019
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9.

001-es BibID:BIBFORM085313
Első szerző:Teixeira da Silva, Jaime A.
Cím:Transcriptomic Response of In Vitro Potato (Solanum tuberosum L.) to Piezoelectric Ultrasound / Jaime A. Teixeira da Silva, Norbert Hidvégi, Andrea Gulyás, Bianka Tóth, Judit Dobránszki
Dátum:2020
ISSN:0735-9640
Megjegyzések:As part of a wider project to assess the impact of ultrasound on in vitro plant growth, this paper aimed to determine whether the application of piezoelectric ultrasound (PE-US) would induce changes to the transcriptome of in vitro potato (Solanum tuberosum L.). After exposing explants (single-node segments with a single leaf) to PE-US (35 kHz; 70 W) for 20 min, the effect of this stressor was determined at 0 h, 24 h, 48 h, 1 week, and 4 weeks to assess the possible immediate and residual effects of PE-US on the potato transcriptome. After mRNA was isolated, bioinformatic processing and analysis of RNA-seq datasets, KEGG analysis revealed that 24% of up-regulated biological processes were a response to stress immediately after the application of PE-US (reducing to 11% and 9% at 48 h and 4 weeks, respectively). After assessing a total of 40,430 genes for expression intensity at these five time intervals, it was found that 138, 72, 18, 5, and 59 differentially expressed genes (DEGs), respectively, were significantly up-regulated, while 6, 82, 96, 172, and 107 DEGs, respectively, were down-regulated. DEGs coding for universal stress protein, chitinase, catalase, zinc finger proteins, 21 transcription factors, glutathione S-transferase, and 17 heat shock proteins, mainly Hsp70, Hsp20, and Hsp90 proteins, and possibly the first of such discovery in US-based plant stress research, was detected. Following the validation of RNA-seq data by RT-qPCR, between SeqMonk LFC and RT-qPCR LFC, the Spearman and Pearson correlation coefficients were 0.86 and 0.90, respectively. Plantlets exposed to PE-US had significantly shorter shoots but significantly longer roots as well as higher shoot and root fresh weight, while chl b and total chl were significantly lower but the chl a/b ratio was significantly higher in plantlets exposed to PE-US. PE-US thus constituted an acute abiotic stress, but by 4 weeks, in vitro potato plantlets managed to mitigate the stress through the production of antioxidant enzyme systems and other functional metabolic changes.
Tárgyszavak:Agrártudományok Növénytermesztési és kertészeti tudományok idegen nyelvű folyóiratközlemény külföldi lapban
folyóiratcikk
Abiotic stress
Chlorophyll
Differentially expressed genes
Enzymes
Heat shock proteins
Plant growth
RT-qPCR
Wounding
Megjelenés:Plant Molecular Biology Reporter. - 38 : 3 (2020), p. 404-418. -
További szerzők:Hidvégi Norbert (1986-) Gulyás Andrea (1985-) Tóth Bianka (1988-) (biológus) Dobránszki Judit (1967-) (biológus)
Pályázati támogatás:NKFIH-1150-6/2019
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10.

001-es BibID:BIBFORM078734
Első szerző:Teixeira da Silva, Jaime A.
Cím:mRNA transcription profile of potato (Solanum tuberosum L.) in response to explant cutting / Jaime A. Teixeira da Silva, Hidvégi Norbert, Gulyás Andrea, Dobránszki Judit
Dátum:2019
Megjegyzések:The explant is an important parameter in plant tissue culture. Most plant tissue culture studies in the literature have focused almost exclusively on the use of explants as a tool for organogenesis or (micro)propagation, and there is limited information that documents the changes that occur in explants in response to cutting during explant preparation just prior to or during culture. To better understand the molecular changes occurring during the wounding process that accompanies the preparation of an explant, this study examined the mRNA transcription profile of 4-week-old potato (Solanum tuberosum L. cv. Desirée) single-node stem segments. To achieve this, RNA-seq analysis was performed to identify significantly differentially expressed genes (DEGs) that existed between uncut in vitro plantlets and cut explants. DEGs corresponding to specific enzyme profiles were broadly connected to cellular processes in the extracellular region, nucleus, and plasma membrane, and were associated with biosynthesis, carbohydrate metabolism and catabolism, cellular protein modification, growth and development, and response to stress. The RNA-seq data of eight highly up- or down-regulated DEGs was validated by RT-qPCR, showing high positive Spearman and Pearson correlation coefficients (0.73 and 0.95, respectively) between SeqMonk LFC and RT-qPCR LFC. These results provide a novel perspective of the changes taking place within explants when they are cut and serve as a valuable basis for the study of explant-related stress in plant tissue culture in other species. In addition, our findings may contribute to an understanding of the success or failure of the tissue culture protocol and subsequent establishment of in vitro cultures by better appreciating the stress-related molecular changes taking place.
Tárgyszavak:Természettudományok Biológiai tudományok idegen nyelvű folyóiratközlemény külföldi lapban
Abiotic stress
Antioxidants
Development
Plant growth
Plant tissue culture
Megjelenés:Plant Cell, Tissue and Organ Culture. - 138 : 1 (2019), p. 143-152. -
További szerzők:Hidvégi Norbert (1986-) Gulyás Andrea (1985-) Dobránszki Judit (1967-) (biológus)
Pályázati támogatás:20428-3/2018/ FEKUTSTRAT
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11.

001-es BibID:BIBFORM077298
Első szerző:Teixeira da Silva, Jaime A.
Cím:In vitro tissue culture of apple and other Malus species : recent advances and applications / Jaime A. Teixeira da Silva, Andrea Gulyás, Katalin Magyar-Tábori, Min-Rui Wang, Qiao-Chun Wang, Judit Dobránszki
Dátum:2019
ISSN:0032-0935 1432-2048
Megjegyzések:Main conclusion Studies on the tissue culture of apple have allowed for molecular, biotechnological and applied breeding research to advance. In the past 8 years, over 100 papers advancing basic biology, genetic transformation and cryobiology have emerged. Apple (Malus?x?domestica Borkh.; Rosaceae) is an important fruit crop grown mainly in temperate regions of the world. In vitro tissue culture is a biotechnological technique that has been used to genetically improve cultivars (scions) and rootstocks. This updated review presents a synthesis of findings related to the tissue culture of apple and other Malus spp. between 2010 and 2018. Increasingly complex molecular studies that are examining the apple genome, for example, in a bid to identify the cause of epigenetic mutations and the role of transposable elements in this process would benefit from genetically stable source material, which can be produced in vitro. Several notable or curious in vitro culture methods have been reported to improve shoot regeneration and induce the production of tetraploids in apple cultivars and rootstocks. Existing studies have revealed the molecular mechanism underlying the inhibition of adventitious roots by cytokinin. The use of the plant growth correction factor allows hypothetical shoot production from leaf-derived thin cell layers relative to conventional leaf explants to be determined. This updated review will allow novices and established researchers to advance apple and Malus biotechnology and breeding programs.
Tárgyszavak:Agrártudományok Növénytermesztési és kertészeti tudományok idegen nyelvű folyóiratközlemény külföldi lapban
Epigenetics
Explants
Plant growth regulator
Phloroglucinol
Thin cell layer
Megjelenés:Planta. - 249 : 4 (2019), p. 975-1006. -
További szerzők:Gulyás Andrea (1985-) Magyarné Tábori Katalin (1965-) (kertészmérnök) Wang, Min-Rui Wang, Qiao-Chun Dobránszki Judit (1967-) (biológus)
Pályázati támogatás:20428-3/2018/FEKUTSTRAT
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