Találati lista | Tudóstér

001-es BibID:	BIBFORM082275
035-os BibID:	(PMID)31003576
Első szerző:	Balogh Gábor (gyógyszerész)
Cím:	First Step of the Transglutaminase Reaction Catalyzed by Activated Factor XIII Subunit A, Hybrid Quantum Chemistry/Molecular Mechanics Calculations / Gábor Balogh, László Muszbek, István Komáromi
Dátum:	2019
ISSN:	1520-6106
Megjegyzések:	The A subunit of blood coagulation factor XIII belongs to the family of transglutaminase enzymes. Its active form (FXIIIa) catalyzes isopeptide bond formation between Glu and Lys residues of specific substrates. Little data are available on the mechanism of this reaction. In this work, the first step of the proposed two-step process was investigated using two different protocols of hybrid QM/molecular mechanics (MM) calculations: an ONIOM-based model as well as QM/MM/molecular dynamics (MD) metadynamics simulations in explicit TIP3P solvent with Gromacs, PLUMED, and a DFTB3 package. Based on calculations involving a truncated system derived from docking of a peptide substrate, our study confirms the higher stability of a zwitterionic form of the catalytic Cys and His residues in the Michaelis complex as well as the "resting" state of the enzyme. Potential energy surfaces, obtained by geometry optimizations with Gaussian, show a two-step reaction mechanism with a zwitterionic tetrahedral intermediate formation in the first and NH3 dissociation in the second step in the case of our ONIOM system. In contrast, in QM/MM MD metadynamics simulations, all three steps occurred in a concerted manner. As a conclusion, our model is able to provide insights into the reaction mechanism of this enzyme.
Tárgyszavak:	idegen nyelvű folyóiratközlemény külföldi lapban folyóiratcikk
Megjelenés:	Journal of Physical Chemistry B. - 123 : 18 (2019), p. 3887-3897. -
További szerzők:	Muszbek László (1942-) (haematológus, kutató orvos) Komáromi István (1957-) (vegyész, molekuláris biológus, biokémikus)
Pályázati támogatás:	GINOP-2.3.2-15-2016-00050 GINOP OTKA-113097 OTKA
Internet cím:	Szerző által megadott URL DOI Intézményi repozitóriumban (DEA) tárolt változat
Borító:
Saját polcon:

001-es BibID:	BIBFORM071082
035-os BibID:	(WoS)000418021500020 (Scopus)85034071656
Első szerző:	Gindele Réka (molekuláris biológus)
Cím:	Clinical and laboratory characteristics of antithrombin deficiencies : a large cohort study from a single diagnostic center / Gindele Réka, Selmeczi Anna, Oláh Zsolt, Ilonczai Péter, Pfliegler György, Marján Erzsébet, Nemes László, Nagy Ágnes, Losonczy Hajna, Mitic Gorana, Kovac Mirjana, Balogh Gábor, Komáromi István, Schlammadinger Ágota, Rázsó Katalin, Boda Zoltán, Muszbek László, Bereczky Zsuzsanna
Dátum:	2017
ISSN:	0049-3848
Megjegyzések:	Abstract: Introduction: Inherited antithrombin (AT) deficiency is a heterogeneous disease. Due to low prevalence, only a few studies are available concerning genotype-phenotype associations. The aim was to describe the clinical, laboratory and genetic characteristics of AT deficiency in a large cohort including children and to add further laboratory data on the different sensitivity of functional AT assays. Patients and methods: Non-related AT deficient patients (n=156) and their family members (total n=246) were recruited. Clinical and laboratory data were collected, the mutation spectrum of SERPINC1 was described. Three different AT functional assays were explored. Results: Thirty-one SERPINC1 mutations including 11 novel ones and high mutation detection rate (98%) were detected. Heparin binding site deficiency (type IIHBS) was the most frequent (75.6%) including AT Budapest3 (ATBp3), AT Padua I and AT Basel (86%, 9% and 4% of type IIHBS, respectively). Clinical and laboratory phenotypes of IIHBS were heterogeneous and dependent on the specific mutation. Arterial thrombosis and pregnancy complications were the most frequent in AT Basel and AT Padua I, respectively. Median age at the time of thrombosis was the lowest in ATBp3 homozygotes. The functional assay with high heparin concentration and pH 7.4 as assay conditions had low (44%) sensitivity for ATBp3 and it was insensitive for AT Basel and Padua I. Conclusion: Type IIHBS deficiencies behave differently in clinical and laboratory phenotypes from each other and from other AT deficiencies. Heparin concentration and pH seem to be the key factors influencing the sensitivity of AT functional assays to IIHBS.
Tárgyszavak:	Orvostudományok Klinikai orvostudományok idegen nyelvű folyóiratközlemény külföldi lapban folyóiratcikk antithrombin deficiency mutation spectrum genotype-phenotype association antithrombin activity assay sensitivity
Megjelenés:	Thrombosis Research. - 160 (2017), p. 119-128. -
További szerzők:	Selmeczi Anna (1982-) (orvos) Oláh Zsolt (1974-) (belgyógyász) Ilonczai Péter (1977-) (orvos, belgyógyász, haematológus szakorvos) Pfliegler György (1949-) (belgyógyász, hematológus, labor szakorvos) Marján Erzsébet Nemes László Nagy Ágnes (belgyógyász) Losonczy Hajna Mitic, Gorana Kovac, Mirjana Balogh Gábor (1991-) (gyógyszerész) Komáromi István (1957-) (vegyész, molekuláris biológus, biokémikus) Schlammadinger Ágota (1971-) (belgyógyász, haematológus) Molnárné Rázsó Katalin (1966-) (belgyógyász, haematológus, klinikai onkológus) Boda Zoltán (1947-) (belgyógyász, haematologus, klinikai onkológus) Muszbek László (1942-) (haematológus, kutató orvos) Bereczky Zsuzsanna (1974-) (orvosi laboratóriumi diagnosztika szakorvos)
Pályázati támogatás:	OTKA-116228 OTKA K106294 OTKA GINOP-2.3.2-15-2016-00039 Egyéb ÚNKP-16-3-III-Gindele Réka Egyéb
Internet cím:	Intézményi repozitóriumban (DEA) tárolt változat DOI
Borító:
Saját polcon: