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001-es BibID:BIBFORM111442
035-os BibID:(Scopus)85158924988 (WoS)000983708900001
Első szerző:Astuti, Putri Kusuma (állattenyésztési genetikus)
Cím:Genetic polymorphism in European and African sheep breeds reared in Hungary based on 48 SNPs associated with resistance to gastrointestinal parasite infection using KASP-PCR technique / Putri Kusuma Astuti; Dinu Gavojdian; Daniela Elena Ilie; George Wanjala; István Monori; Zoltán Bagi; Szilvia Kusza
Dátum:2023
ISSN:0049-4747 1573-7438
Megjegyzések:This pilot study used an alternative and economically efcient technique, the Kompetitive Allele-Specifc Polymerase Chain Reaction (KASP-PCR) to examine 48 SNPs from 11 parasite-resistance genes found on 8 chromosomes in 110 animals from fve sheep breeds reared in Hungary; Hungarian Tsigai, White Dorper, Dorper, Ile de France, and Hungarian Merino. Allele and genotype frequencies, fxation index, observed heterozygosity, expected heterozygosity, F statistic, and their relationship with the Hardy-Weinberg equilibrium (WHE) and the polymorphic information content (PIC) were determined, followed by principal component analysis (PCA). As much as 32 SNPs out of the 48 initially studied were successfully genotyped. A total of 9 SNPs, 4 SNPs in TLR5, 1 SNP in TLR8, and 4 SNPs in TLR2 genes, were polymorphic. The variable genotype and allele frequency of the TLRs gene indicated genetic variability among the studied sheep breeds, with the Hungarian Merino exhibiting the most polymorphisms, while Dorper was the population with the most SNPs departing from the HWE. According to the PIC value, the rs430457884-TLR2, rs55631273-TLR2, and rs416833129-TLR5 were found to be informative in detecting polymorphisms among individuals within the populations, whereas the rs429546187-TLR5 and rs424975389- TLR5 were found to have a signifcant infuence in clustering the population studied. This study reported a moderate level of genetic variability and that a low to moderate within-breed diversity was maintained in the studied populations.
Tárgyszavak:Agrártudományok Állattenyésztési tudományok idegen nyelvű folyóiratközlemény külföldi lapban
folyóiratcikk
KASP PCR
Ovis aries
Parasite resistance genes
Polymorphism
TLRs
Megjelenés:Tropical Animal Health and Production. - 55 : 3 (2023), p. 1-12. -
További szerzők:Gavojdian, Dinu Ilie, Daniela Elena Wanjala, George (1984-) (Animal scientist) Monori István (1976-) (agrármérnök) Bagi Zoltán (1987-) (természetvédelmi mérnök, állatgenetika) Kusza Szilvia (1979-) (agrármérnök)
Pályázati támogatás:EFOP-3.6.2-16-2017-00001
EFOP
VP3-16.1.1-4.1.5- 4.2.1-4.2.2-8.1.1-8.2.1-8.3.1-8.5.1-8.5.2-8.6.1-17
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Internet cím:DOI
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